Rnu2-69p (RNA, U2 small nuclear 69, pseudogene) - Rat Genome Database

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Gene: Rnu2-69p (RNA, U2 small nuclear 69, pseudogene) Rattus norvegicus
Analyze
Symbol: Rnu2-69p (Ensembl: LOC120098731)
Name: RNA, U2 small nuclear 69, pseudogene (Ensembl:U2 spliceosomal RNA)
RGD ID: 41093326
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: MODEL
Previously known as: LOC120098731; U2; U2 spliceosomal RNA
RGD Orthologs
Human
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8199,798,008 - 9,798,147 (-)NCBIGRCr8
mRatBN7.2199,791,958 - 9,792,097 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl199,791,958 - 9,792,097 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map19p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Rnu2-69p
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8199,798,008 - 9,798,147 (-)NCBIGRCr8
mRatBN7.2199,791,958 - 9,792,097 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl199,791,958 - 9,792,097 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map19p13NCBI
RNU2-69P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381858,926,197 - 58,926,296 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1858,926,197 - 58,926,296 (-)EnsemblGRCh38hg38GRCh38
GRCh371856,593,429 - 56,593,528 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map18q21.32NCBI
T2T-CHM13v2.01859,127,451 - 59,127,550 (-)NCBIT2T-CHM13v2.0
LOC119869932
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha150,486,981 - 50,487,085 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0149,828,934 - 49,829,038 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl149,828,934 - 49,829,038 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1149,711,230 - 49,711,334 (-)NCBIUMICH_Zoey_3.1
UU_Cfam_GSD_1.0150,198,531 - 50,198,635 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Rnu2-69p
1 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549847Bss8Bone structure and strength QTL 84lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)19131963836Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19136824771Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
631681Cm12Cardiac mass QTL 123.330.00053heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)19128982497Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19136824771Rat
10054132Srcrt9Stress Responsive Cort QTL 92.870.0017blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19127355345Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
7411590Foco7Food consumption QTL 76.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)19124688055Rat
631678Cm9Cardiac mass QTL 94.270.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)19128982497Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19136824771Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19136824771Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000096664
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl199,791,958 - 9,792,097 (-)Ensembl
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-6526 BioCyc
Ensembl Genes ENSRNOG00000069545 Ensembl
NCBI Gene LOC120098731 ENTREZGENE
PhenoGen Rnu2-69p PhenoGen
RatGTEx ENSRNOG00000069545 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-11-01 Rnu2-69p  RNA, U2 small nuclear 69, pseudogene  LOC120098731  U2 spliceosomal RNA  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2022-05-26 LOC120098731  U2 spliceosomal RNA  U2  U2 spliceosomal RNA  Data merged from RGD:150343304 737654 PROVISIONAL
2021-08-31 U2  U2 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL
2021-01-27 LOC120098731  U2 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL