LOC120098681 (small nucleolar RNA SNORA44) - Rat Genome Database

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Gene: LOC120098681 (small nucleolar RNA SNORA44) Rattus norvegicus
Analyze
Symbol: LOC120098681
Name: small nucleolar RNA SNORA44
RGD ID: 41023185
Description:
Type: snorna
RefSeq Status: MODEL
Previously known as: AABR07042668.2
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8192,218,123 - 2,218,251 (+)NCBIGRCr8
mRatBN7.2192,211,733 - 2,211,861 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl192,211,733 - 2,211,861 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl192,456,771 - 2,456,899 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map19p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC120098681
1 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411590Foco7Food consumption QTL 76.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)19124688055Rat
10054132Srcrt9Stress Responsive Cort QTL 92.870.0017blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19127355345Rat
631678Cm9Cardiac mass QTL 94.270.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)19128982497Rat
631681Cm12Cardiac mass QTL 123.330.00053heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)19128982497Rat
1549847Bss8Bone structure and strength QTL 84lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)19131963836Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19136824771Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19136824771Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19136824771Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19136824771Rat
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005497105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000083178
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl192,211,733 - 2,211,861 (+)Ensembl
RefSeq Acc Id: XR_005497105
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8192,218,123 - 2,218,251 (+)NCBI
mRatBN7.2192,211,733 - 2,211,861 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-6617 BioCyc
Ensembl Genes ENSRNOG00000058366 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000083178 ENTREZGENE
NCBI Gene LOC120098681 ENTREZGENE
PhenoGen LOC120098681 PhenoGen
RatGTEx ENSRNOG00000058366 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120098681  small nucleolar RNA SNORA44  AABR07042668.2    Data merged from RGD:15011732 737654 PROVISIONAL
2021-01-27 LOC120098681  small nucleolar RNA SNORA44      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 AABR07042668.2        Symbol and Name status set to provisional 45752 PROVISIONAL