Gm53808 (predicted gene, 53808) - Rat Genome Database

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Gene: Gm53808 (predicted gene, 53808) Mus musculus
Analyze
Symbol: Gm53808
Name: predicted gene, 53808
RGD ID: 39130449
MGI Page MGI
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC118568080; MLV-related proviral Env polyprotein-like
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391399,122,857 - 99,131,473 (-)NCBIGRCm39GRCm39mm39
Cytogenetic Map13D1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm53808
313 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300876Tanidd2_mtally ho associated non-insulin dependednt diabetes mellitus 2 (mouse)Not determined1391965303120883175Mouse
1301142Heal2_mwound healing/regeneration 2 (mouse)Not determined1393875267120883175Mouse
1301445Listr2_mlisteriosis resistance 2 (mouse)Not determined1366744601100744746Mouse
1300939Hrtfm6_mheart failure modifier 6 (mouse)Not determined1391383692120883175Mouse
1301593Heal8_mwound healing/regeneration 8 (mouse)Not determined1368053999102054119Mouse
1558763Gct9_mgranulosa cell tumorigenesis 9 (mouse)Not determined1395036824120883175Mouse
1357468Rplag_mreduced platelet aggregation (mouse)Not determined1395502130120883175Mouse
1558741Ses10_msalmonella enteritidis susceptibility 10 (mouse)Not determined1382739968116740106Mouse
4140959W10q17_mweight 10 weeks QTL 17 (mouse)Not determined55720354112431103Mouse
4140995Fbtq6_mfemoral bone trait QTL 6 (mouse)Not determined1386341617120341758Mouse
4141266Mol3_mmodifier of LPS-response 3 (mouse)Not determined76132600112431103Mouse
4142465Pbwg17_mpostnatal body weight growth 17 (mouse)Not determined1383876060117876256Mouse
4141992W6q16_mweight 6 weeks QTL 16 (mouse)Not determined55720354112431103Mouse
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
4142241Tailq3_mtail length QTL 3 (mouse)Not determined55720354112431103Mouse
4142314Tailaq3_mtail length adjusted QTL 3 (mouse)Not determined55720354112431103Mouse
4142338Skmw18_mskeletal muscle weight 18 (mouse)Not determined1394528399120883175Mouse
4141728Egaq4_mearly growth adjusted QTL 4 (mouse)Not determined87901985112431103Mouse
10043997Bw40_mbody weight QTL 40 (mouse)Not determined1479239045113239162Mouse
10402414Sgp5_mserum gp70 production 5 (mouse)Not determined1356470456105422186Mouse
10045623Heal18_mwound healing regeneration 18 (mouse)Not determined1379239045113239162Mouse
12880414V125Dq10_mvitamin D active form serum level QTL 10 (mouse)1378036508112036508Mouse
14700691Cisaq1_mcoxsackieviral infection serum ALT QTL 1 (mouse)1386148119120461536Mouse
14747007Mancz11_mmandible centroid size 11 (mouse)1370111284104111284Mouse
14696726Kidrq3_mkidney weight, right QTL 3 (mouse)1368217066102217066Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_036158283   ⟹   XP_036014176
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391399,122,857 - 99,131,250 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036158284   ⟹   XP_036014177
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391399,122,857 - 99,128,035 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036158285   ⟹   XP_036014178
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391399,122,857 - 99,130,708 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036158286   ⟹   XP_036014179
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391399,122,857 - 99,129,683 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036158287   ⟹   XP_036014180
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391399,122,857 - 99,131,473 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036158288   ⟹   XP_036014181
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391399,122,857 - 99,126,568 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_036014180   ⟸   XM_036158287
- UniProtKB: Q811N4 (UniProtKB/Swiss-Prot),   Q811M9 (UniProtKB/Swiss-Prot),   Q80SY1 (UniProtKB/Swiss-Prot),   Q80SY0 (UniProtKB/Swiss-Prot),   Q80SW8 (UniProtKB/Swiss-Prot),   Q80SW7 (UniProtKB/Swiss-Prot),   Q78N94 (UniProtKB/Swiss-Prot),   Q78N73 (UniProtKB/Swiss-Prot),   Q78N71 (UniProtKB/Swiss-Prot),   P10404 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036014176   ⟸   XM_036158283
- UniProtKB: Q811N4 (UniProtKB/Swiss-Prot),   Q811M9 (UniProtKB/Swiss-Prot),   Q80SY1 (UniProtKB/Swiss-Prot),   Q80SY0 (UniProtKB/Swiss-Prot),   Q80SW8 (UniProtKB/Swiss-Prot),   Q80SW7 (UniProtKB/Swiss-Prot),   Q78N94 (UniProtKB/Swiss-Prot),   Q78N73 (UniProtKB/Swiss-Prot),   Q78N71 (UniProtKB/Swiss-Prot),   P10404 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036014178   ⟸   XM_036158285
- UniProtKB: Q811N4 (UniProtKB/Swiss-Prot),   Q811M9 (UniProtKB/Swiss-Prot),   Q80SY1 (UniProtKB/Swiss-Prot),   Q80SY0 (UniProtKB/Swiss-Prot),   Q80SW8 (UniProtKB/Swiss-Prot),   Q80SW7 (UniProtKB/Swiss-Prot),   Q78N94 (UniProtKB/Swiss-Prot),   Q78N73 (UniProtKB/Swiss-Prot),   Q78N71 (UniProtKB/Swiss-Prot),   P10404 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036014179   ⟸   XM_036158286
- UniProtKB: Q811N4 (UniProtKB/Swiss-Prot),   Q811M9 (UniProtKB/Swiss-Prot),   Q80SY1 (UniProtKB/Swiss-Prot),   Q80SY0 (UniProtKB/Swiss-Prot),   Q80SW8 (UniProtKB/Swiss-Prot),   Q80SW7 (UniProtKB/Swiss-Prot),   Q78N94 (UniProtKB/Swiss-Prot),   Q78N73 (UniProtKB/Swiss-Prot),   Q78N71 (UniProtKB/Swiss-Prot),   P10404 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036014177   ⟸   XM_036158284
- UniProtKB: Q811N4 (UniProtKB/Swiss-Prot),   Q811M9 (UniProtKB/Swiss-Prot),   Q80SY1 (UniProtKB/Swiss-Prot),   Q80SY0 (UniProtKB/Swiss-Prot),   Q80SW8 (UniProtKB/Swiss-Prot),   Q80SW7 (UniProtKB/Swiss-Prot),   Q78N94 (UniProtKB/Swiss-Prot),   Q78N73 (UniProtKB/Swiss-Prot),   Q78N71 (UniProtKB/Swiss-Prot),   P10404 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036014181   ⟸   XM_036158288
- UniProtKB: Q811N4 (UniProtKB/Swiss-Prot),   Q811M9 (UniProtKB/Swiss-Prot),   Q80SY1 (UniProtKB/Swiss-Prot),   Q80SY0 (UniProtKB/Swiss-Prot),   Q80SW8 (UniProtKB/Swiss-Prot),   Q80SW7 (UniProtKB/Swiss-Prot),   Q78N94 (UniProtKB/Swiss-Prot),   Q78N73 (UniProtKB/Swiss-Prot),   Q78N71 (UniProtKB/Swiss-Prot),   P10404 (UniProtKB/Swiss-Prot)


Additional Information

Database Acc Id Source(s)
Gene3D-CATH 1.10.287.210 UniProtKB/Swiss-Prot
  ENV polyprotein, receptor-binding domain UniProtKB/Swiss-Prot
InterPro FMuLV_rcpt-bd UniProtKB/Swiss-Prot
  TLV/ENV_coat_polyprotein UniProtKB/Swiss-Prot
MGD MGI:6722656 ENTREZGENE
NCBI Gene LOC118568080 ENTREZGENE
PANTHER BC035947 PROTEIN-RELATED UniProtKB/Swiss-Prot
  VIRAL ENVELOPE PROTEIN UniProtKB/Swiss-Prot
Pfam TLV_coat UniProtKB/Swiss-Prot
PhenoGen Gm53808 PhenoGen
Superfamily-SCOP ENV polyprotein, receptor-binding domain UniProtKB/Swiss-Prot
  Virus ectodomain UniProtKB/Swiss-Prot
UniProt ENV1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q78N71 ENTREZGENE
  Q78N73 ENTREZGENE
  Q78N94 ENTREZGENE
  Q80SW7 ENTREZGENE
  Q80SW8 ENTREZGENE
  Q80SY0 ENTREZGENE
  Q80SY1 ENTREZGENE
  Q811M9 ENTREZGENE
  Q811N4 ENTREZGENE
UniProt Secondary Q78N71 UniProtKB/Swiss-Prot
  Q78N73 UniProtKB/Swiss-Prot
  Q78N94 UniProtKB/Swiss-Prot
  Q80SW7 UniProtKB/Swiss-Prot
  Q80SW8 UniProtKB/Swiss-Prot
  Q80SY0 UniProtKB/Swiss-Prot
  Q80SY1 UniProtKB/Swiss-Prot
  Q811M9 UniProtKB/Swiss-Prot
  Q811N4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-08-03 Gm53808  predicted gene, 53808  LOC118568080  MLV-related proviral Env polyprotein-like  Symbol and/or name change 5135510 APPROVED