Gm53885 (predicted gene, 53885) - Rat Genome Database

Name: Gm53885
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Gm53885 (predicted gene, 53885) Mus musculus

Analyze

Symbol:

Gm53885

Name:

predicted gene, 53885

RGD ID:

39129862

MGI Page

MGI

Description:

Type:

ncrna

RefSeq Status:

MODEL

Previously known as:

LOC118568189; uncharacterized LOC118568189

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	19,208,858 - 19,247,579 (-)	NCBI	GRCm39	GRCm39	mm39
Cytogenetic Map	15	A2	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Genomics

Variants

Variants in Gm53885
1899 total Variants

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1357459	Nhdlq7_m	non-HDL QTL 7 (mouse)			Not determined		15	1	20489829	Mouse
1302121	Cliff_m	cliff drop aversion (mouse)			Not determined		15	1	20489829	Mouse
1300953	Bdt5_m	bone density traits 5 (mouse)			Not determined		15	1	20489829	Mouse
5491193	Mobq4_m	multigenic obesity QTL 4 (mouse)			Not determined		15	1	20489829	Mouse
1301662	Faq8_m	fluctuating asymmetry QTL 8 (mouse)			Not determined		15	1	20489829	Mouse
1301023	Sluc24_m	susceptibility to lung cancer 24 (mouse)			Not determined		15	1	20489829	Mouse
4141541	Tglq3_m	triglyceride QTL 3 (mouse)			Not determined		15	1	20489829	Mouse
11062069	Bpq31_m	blood pressure QTL 31 (mouse)					15	1	26273195	Mouse
4141446	Ffaq4_m	free fatty acid QTL 4 (mouse)			Not determined			1	27101390	Mouse
1300594	Eae2_m	susceptibility to experimental allergic encephalomyelitis 2 (mouse)			Not determined		15	1	31218736	Mouse
1301136	Pgia8_m	proteoglycan induced arthritis 8 (mouse)			Not determined		15	3240167	24388176	Mouse
4141358	Ath22_m	atherosclerosis 22 (mouse)			Not determined			3464652	37464652	Mouse
10401902	Sicd2_m	seizure-induced cell death 2 (mouse)			Not determined		15	3474389	71197538	Mouse
4141952	W3q7_m	weight 3 weeks QTL 7 (mouse)			Not determined			3489694	78601286	Mouse
4142252	Tailaq4_m	tail length adjusted QTL 4 (mouse)			Not determined			3489694	78601286	Mouse
4142448	Tailq6_m	tail length QTL 6 (mouse)			Not determined			3489694	78601286	Mouse
1357559	Scfq2_m	subcutaneous fat pad weight QTL 2 (mouse)			Not determined		15	3489694	78601286	Mouse
1357659	Epfpq4_m	epididymal fat percentage QTL 4 (mouse)			Not determined		15	3489694	78601286	Mouse
11252136	Modvl4_m	modifier of vacuolated lens (mouse)					15	5620494	39620614	Mouse
26884409	Bzwq16_m	bi-zygomatic width QTL 16, 16 week (mouse)					15	6129481	38000244	Mouse
26884384	Skwq12_m	skull length QTL 12, 16 week (mouse)					15	6129481	50763396	Mouse
26884387	Skwq8_m	skull length QTL 8, 10 week (mouse)					15	6129481	68271849	Mouse
26884412	Bzwq10_m	bi-zygomatic width QTL 10, 10 week (mouse)					15	6129481	71471849	Mouse
26884417	Bzwq4_m	bi-zygomatic width QTL 4, 5 week (mouse)					15	6129481	72471849	Mouse
27226786	Feml11_m	femur length 11, 5 week (mouse)					15	6129481	75871849	Mouse
27095932	Ulnl11_m	ulna length 11, 16 week (mouse)					15	6129481	76384200	Mouse
27226717	Tibw4_m	tibia width 4, proximal, 10 week (mouse)					15	6129481	78684200	Mouse
27226734	Tibmd5_m	tibia midshaft diameter 5, 10 week (mouse)					15	6129481	86684201	Mouse
26884442	Sklq6_m	skull length QTL 6, 5 week (mouse)					15	6129481	100797881	Mouse
26884429	Zlq6_m	zygomatic length QTL 6, 10 week (mouse)					15	6829481	44963396	Mouse
27226721	Tibw8_m	tibia width 8, proximal, 16 week (mouse)					15	6929481	75871849	Mouse
27226773	Tibl16_m	tibia length 16, 10 week (mouse)					15	6929481	75871849	Mouse
27226777	Tibl8_m	tibia length 8, 5 week (mouse)					15	6929481	84584201	Mouse
27095940	Ulnl8_m	ulna length 8, 10 week (mouse)					15	7229481	55263396	Mouse
27226759	Feml17_m	femur length 17, 10 week (mouse)					15	7629481	55263396	Mouse
27226755	Feml22_m	femur length 22, 16 week (mouse)					15	7629481	59271849	Mouse
27095922	Pglq11_m	pelvic girdle length QTL 11, 10 week (mouse)					15	8129484	38763395	Mouse
26884439	Sklq11_m	skull length QTL 11, 10 week (mouse)					15	8129484	47663396	Mouse
10412172	Habiir5_m	hyperoxic acute lung injury imprinted region 5 (mouse)			Not determined		15	9273022	43311880	Mouse
4140994	Shali3_m	survival time to hyperoxic acute lung injury 3 (mouse)			Not determined			9273022	43311880	Mouse
4141192	Ssrq2_m	stress response QTL 2 (mouse)			Not determined			9273022	56186850	Mouse
1301433	Rapop5_m	radiation-induced apoptosis 5 (mouse)			Not determined		15	9273022	79474762	Mouse
1357526	Hyplip2_m	hyperlipidemia 2 (mouse)			Not determined		15	12402203	102896555	Mouse
1301020	Pheo_m	pheomelanin (mouse)			Not determined		15	13847006	47847148	Mouse
1302165	Yv_m	yellow value (mouse)			Not determined		15	13847006	47847148	Mouse
4141423	Nstr2_m	nerve sheath tumor resistance QTL 2 (mouse)			Not determined			14927587	48927756	Mouse
1301951	Eila3_m	ethanol induced locomotor activity 3 (mouse)			Not determined		15	14927587	48927756	Mouse
1302007	Bbaa14_m	B.burgdorferi-associated arthritis 14 (mouse)			Not determined		15	14927587	48927756	Mouse
1301499	Bdln2_m	body length 2 (mouse)			Not determined		15	15645343	49645470	Mouse
12859288	Criq1_m	Citrobacter rodentium infection QTL 1 (mouse)					15	16033954	50033954	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_004938935	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_004938936	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_004938937	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_004938938	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_004938939	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC122393	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XR_004938935

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	15	19,208,858 - 19,247,579 (-)	NCBI

Sequence:

show sequence

GAGCCTTGAACAGGGAATCATCTTGGCTCCATTATCTTTCTCGCTGTCTTAAGTCTCTTTTAGC
TCCAGCCTGCCTCCCAGGTGTACCTGGTCCTTGTAAGCCACAGGTCGGGTCAGCTTGCTACAGA
TTGGCTTCCAGGCCAGGGACCTGAGGAACGGCAGGAGATTCTGAGGGAACACTGCTTCCTGTGG
AGCTCCAAGAGAAGGGAAGAATCAGAGGATCATATCGGGCACAGTGAGCAACAGGTTCCTGAAC
ACTGACGGTAGAGCTGTGACAAAGGCTGAATGCTCCAAAGTCCCTCACTCTCTGCACATTTTCC
AGATGTTGGTGTCTTTAATTACCATGCATTTCAAGAAGAATGTTCTCTGACACTTGCCAAGTCG
CACAAATTCCTGAAATCACATCACCATGAAGCTTATGTCTGTTGAGTTGGTACTTCAAAGAGGT
ACTTGAAGCCTATATGTCCACATTCAGAGAAAAAGCACATTTTAGACCCAATATAAAGATCAAG
AGAAAGCTGGAACTAACATGTATAGAACTACCCATCATGGAGAAAGCTAGCCAGTAGGAATGAT
ACTTCCAGGCTTTGCAATGTCACTGTTGTGCAACCAGAGGCACAGAAACTGCAGCTGTGAGACT
CCAATCCTTTCTGCTTAGATTTGTTGCCAGTAGGGAACTATGAGCATGAGGTCAGCCTTGCAAG
CACTACCAGAGGCTTCAGCAGCAGATCACCAGCTGTGGATGATACTCTTTCACCTTCTATAAAC
TCAGCTAACAGTTTTAGACAGGACCCTGGGAAAACTGTCTCCTGAGAAGCTTCATCCAGCAGCT
ATGGAAGCAGATGCAGAAATCCATAGCCAAACATCAGGCAGAGGTCCTGGAGTCTTGTGGAAGA
GTGTGGGAGCAGTGAGCAAGTTGGACTGGTCAACGACACCACAAGGAGACACACAAGTAACTTG
GGACCATGGGAGCTCCCAGAACCTGGGCCACCAACAAGGAATGAAAAGGTGAAAGAATAAGAAT
GAGAATAGAAGCTGTAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGT
ACAT

hide sequence

RefSeq Acc Id:

XR_004938936

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	15	19,208,858 - 19,247,579 (-)	NCBI

Sequence:

show sequence

GAGCCTTGAACAGGGAATCATCTTGGCTCCATTATCTTTCTCGCTGTCTTAAGTCTCTTTTAGC
TCCAGCCTGCCTCCCAGGTGTACCTGGTCCTTGTAAGCCACAGGTCGGGTCAGCTTGCTACAGA
TTGGCTTCCAGGCCAGGGACCTGAGGAACGGCAGGAGATTCTGAGGGAACACTGCTTCCTGTGG
AGCTCCAAGAGAAGGGAAGAATCAGAGGATCATATCGGGCACAGTGAGCAACAGGTTCCTGAAC
ACTGACGGTAGAGCTGTGACAAAGGCTGAATGCTCCAAAGTCCCTCACTCTCTGCACATTTTCC
AGATGTTGGTGTCTTTAATTACCATGCATTTCAAGAAGAATGTTCTCTGACACTTGCCAAGTCG
CACAAATTCCTGAAATCACATCACCATGAAGCTTATGTCTGTTGAGTTGGTACTTCAAAGAGGT
ACTTGAAGCCTATATGTCCACATTCAGAGAAAAAGCACATTTTAGACCCAATATAAAGATCAAG
AGAAAGCTGGAAGCTTTGCAATGTCACTGTTGTGCAACCAGAGGCACAGAAACTGCAGCTGTGA
GACTCCAATCCTTTCTGCTTAGATTTGTTGCCAGTAGGGAACTATGAGCATGAGGTCAGCCTTG
CAAGCACTACCAGAGGCTTCAGCAGCAGATCACCAGCTGTGGATGATACTCTTTCACCTTCTAT
AAACTCAGCTAACAGTTTTAGACAGGACCCTGGGAAAACTGTCTCCTGAGAAGCTTCATCCAGC
AGCTATGGAAGCAGATGCAGAAATCCATAGCCAAACATCAGGCAGAGGTCCTGGAGTCTTGTGG
AAGAGTGTGGGAGCAGTGAGCAAGTTGGACTGGTCAACGACACCACAAGGAGACACACAAGTAA
CTTGGGACCATGGGAGCTCCCAGAACCTGGGCCACCAACAAGGAATGAAAAGGTGAAAGAATAA
GAATGAGAATAGAAGCTGTAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACAT

hide sequence

RefSeq Acc Id:

XR_004938937

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	15	19,208,858 - 19,247,579 (-)	NCBI

Sequence:

show sequence

GAGCCTTGAACAGGGAATCATCTTGGCTCCATTATCTTTCTCGCTGTCTTAAGTCTCTTTTAGC
TCCAGCCTGCCTCCCAGGTGTACCTGGTCCTTGTAAGCCACAGGTCGGGTCAGCTTGCTACAGA
TTGGCTTCCAGGCCAGGGACCTGAGGAACGGCAGGAGATTCTGAGGGAACACTGCTTCCTGTGG
AGCTCCAAGAGAAGGGAAGAATCAGAGGATCATATCGGGCACAGTGAGCAACAGGTTCCTGAAC
ACTGACGGTAGAGCTGTGACAAAGGCTGAATGCTCCAAAGTCCCTCACTCTCTGCACATTTTCC
AGATGTTGGTGTCTTTAATTACCATGCATTTCAAGAAGAATGTTCTCTGACACTTGGCCTACAA
AAGGACAATGGAGGAAGGAAGGTTTCTTCTCCTACTTGCACTTACTTGCCAGCTTTTCTGTTGG
AAACTGCTTCTTCAGAATTTCAGCTTATACAGAAAACCAGCTGAAGCACCTAGCTTCATGGAAC
TGAGCAACTGCTAGATTCTTGGACTTCATATTTACAGCTGCCAAAGGATTAGTAGGACCGCAGA
CTAAAACCAAGTCGCACAAATTCCTGAAATCACATCACCATGAAGCTTATGTCTGTTGAGTTGG
TACTTCAAAGAGGTACTTGAAGCCTATATGTCCACATTCAGAGAAAAAGCACATTTTAGACCCA
ATATAAAGATCAAGAGAAAGCTGGAACTAACATGTATAGAACTACCCATCATGGAGAAAGCTAG
CCAGTAGGAATGATACTTCCAGGCTTTGCAATGTCACTGTTGTGCAACCAGAGGCACAGAAACT
GCAGCTGTGAGACTCCAATCCTTTCTGCTTAGATTTGTTGCCAGTAGGGAACTATGAGCATGAG
GTCAGCCTTGCAAGCACTACCAGAGGCTTCAGCAGCAGATCACCAGCTGTGGATGATACTCTTT
CACCTTCTATAAACTCAGCTAACAGTTTTAGACAGGACCCTGGGAAAACTGTCTCCTGAGAAGC
TTCATCCAGCAGCTATGGAAGCAGATGCAGAAATCCATAGCCAAACATCAGGCAGAGGTCCTGG
AGTCTTGTGGAAGAGTGTGGGAGCAGTGAGCAAGTTGGACTGGTCAACGACACCACAAGGAGAC
ACACAAGTAACTTGGGACCATGGGAGCTCCCAGAACCTGGGCCACCAACAAGGAATGAAAAGGT
GAAAGAATAAGAATGAGAATAGAAGCTGTAAAGAACCCAGATGCCCCTCAACAGAGGAATGGAT
ACAGAAAATGTGGTACAT

hide sequence

RefSeq Acc Id:

XR_004938938

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	15	19,208,858 - 19,247,579 (-)	NCBI

Sequence:

show sequence

GAGCCTTGAACAGGGAATCATCTTGGCTCCATTATCTTTCTCGCTGTCTTAAGTCTCTTTTAGC
TCCAGCCTGCCTCCCAGGTGTACCTGGTCCTTGTAAGCCACAGGTCGGGTCAGCTTGCTACAGA
TTGGCTTCCAGGCCAGGGACCTGAGGAACGGCAGGAGATTCTGAGGGAACACTGCTTCCTGTGG
AGCTCCAAGAGAAGGGAAGAATCAGAGGATCATATCGGGCACAGTGAGCAACAGGTTCCTGAAC
ACTGACGGTAGAGCTGTGACAAAGGCTGAATGCTCCAAAGTCCCTCACTCTCTGCACATTTTCC
AGATGTTGGTGTCTTTAATTACCATGCATTTCAAGAAGAATGTTCTCTGACACTTGCTAACATG
TATAGAACTACCCATCATGGAGAAAGCTAGCCAGTAGGAATGATACTTCCAGGCTTTGCAATGT
CACTGTTGTGCAACCAGAGGCACAGAAACTGCAGCTGTGAGACTCCAATCCTTTCTGCTTAGAT
TTGTTGCCAGTAGGGAACTATGAGCATGAGGTCAGCCTTGCAAGCACTACCAGAGGCTTCAGCA
GCAGATCACCAGCTGTGGATGATACTCTTTCACCTTCTATAAACTCAGCTAACAGTTTTAGACA
GGACCCTGGGAAAACTGTCTCCTGAGAAGCTTCATCCAGCAGCTATGGAAGCAGATGCAGAAAT
CCATAGCCAAACATCAGGCAGAGGTCCTGGAGTCTTGTGGAAGAGTGTGGGAGCAGTGAGCAAG
TTGGACTGGTCAACGACACCACAAGGAGACACACAAGTAACTTGGGACCATGGGAGCTCCCAGA
ACCTGGGCCACCAACAAGGAATGAAAAGGTGAAAGAATAAGAATGAGAATAGAAGCTGTAAAGA
ACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACAT

hide sequence

RefSeq Acc Id:

XR_004938939

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	15	19,208,858 - 19,247,579 (-)	NCBI

Sequence:

show sequence

GAGCCTTGAACAGGGAATCATCTTGGCTCCATTATCTTTCTCGCTGTCTTAAGTCTCTTTTAGC
TCCAGCCTGCCTCCCAGGTGTACCTGGTCCTTGTAAGCCACAGGTCGGGTCAGCTTGCTACAGA
TTGGCTTCCAGGCCAGGGACCTGAGGAACGGCAGGAGATTCTGAGGGAACACTGCTTCCTGTGG
AGCTCCAAGAGAAGGGAAGAATCAGAGGATCATATCGGGCACAGTGAGCAACAGGTTCCTGAAC
ACTGACGGTAGAGCTGTGACAAAGGCTGAATGCTCCAAAGTCCCTCACTCTCTGCACATTTTCC
AGATGTTGGTGTCTTTAATTACCATGCATTTCAAGAAGAATGTTCTCTGACACTTGGCTTTGCA
ATGTCACTGTTGTGCAACCAGAGGCACAGAAACTGCAGCTGTGAGACTCCAATCCTTTCTGCTT
AGATTTGTTGCCAGTAGGGAACTATGAGCATGAGGTCAGCCTTGCAAGCACTACCAGAGGCTTC
AGCAGCAGATCACCAGCTGTGGATGATACTCTTTCACCTTCTATAAACTCAGCTAACAGTTTTA
GACAGGACCCTGGGAAAACTGTCTCCTGAGAAGCTTCATCCAGCAGCTATGGAAGCAGATGCAG
AAATCCATAGCCAAACATCAGGCAGAGGTCCTGGAGTCTTGTGGAAGAGTGTGGGAGCAGTGAG
CAAGTTGGACTGGTCAACGACACCACAAGGAGACACACAAGTAACTTGGGACCATGGGAGCTCC
CAGAACCTGGGCCACCAACAAGGAATGAAAAGGTGAAAGAATAAGAATGAGAATAGAAGCTGTA
AAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACAT

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
MGD	MGI:6722805	ENTREZGENE
NCBI Gene	LOC118568189	ENTREZGENE
PhenoGen	Gm53885	PhenoGen

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-08-03	Gm53885	predicted gene, 53885	LOC118568189	uncharacterized LOC118568189	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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