Derpc (DERPC proline and glycine rich nuclear protein) - Rat Genome Database

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Gene: Derpc (DERPC proline and glycine rich nuclear protein) Mus musculus
Analyze
Symbol: Derpc
Name: DERPC proline and glycine rich nuclear protein
RGD ID: 39128734
MGI Page MGI
Description: Predicted to be located in nucleoplasm.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: decreased expression in renal and prostate cancer protein; Gm50241
RGD Orthologs
Human
Rat
Squirrel
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398107,610,495 - 107,620,225 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8107,610,522 - 107,620,225 (-)EnsemblGRCm39 Ensembl
GRCm388106,883,863 - 106,893,593 (-)NCBIGRCm38GRCm38mm10GRCm38
Cytogenetic Map8D3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DerpcMouse4,4'-sulfonyldiphenol multiple interactionsISORGD:210797266480464[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of more ...CTDPMID:36041667
DerpcMousebisphenol A multiple interactionsISORGD:210797266480464[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of more ...CTDPMID:36041667
DerpcMousebisphenol F multiple interactionsISORGD:210797266480464[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of more ...CTDPMID:36041667
DerpcMousecadmium dichloride increases expressionISORGD:138252036480464Cadmium Chloride results in increased expression of DERPC proteinCTDPMID:38185225
DerpcMouseokadaic acid increases expressionISORGD:138252036480464Okadaic Acid results in increased expression of DERPC mRNACTDPMID:38832940


Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DerpcMousenucleoplasm located_inISOUniProtKB:P0CG122290270 GO_CentralGO_REF:0000119
DerpcMousenucleoplasm located_inIEAUniProtKB:L0R4W3|UniProtKB:P0CG12|ensembl:ENSP000004277182290270 EnsemblGO_REF:0000107

PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:15489334   PMID:16141072   PMID:16141073   PMID:19468303   PMID:24129315  



Derpc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398107,610,495 - 107,620,225 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8107,610,522 - 107,620,225 (-)EnsemblGRCm39 Ensembl
GRCm388106,883,863 - 106,893,593 (-)NCBIGRCm38GRCm38mm10GRCm38
Cytogenetic Map8D3NCBI
DERPC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381669,118,010 - 69,132,588 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1669,118,010 - 69,132,588 (-)EnsemblGRCh38hg38GRCh38
GRCh371669,151,913 - 69,166,491 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map16q22.1NCBI
T2T-CHM13v2.01674,914,320 - 74,928,895 (-)NCBIT2T-CHM13v2.0
Derpc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81951,692,005 - 51,702,076 (-)NCBIGRCr8
mRatBN7.21934,782,234 - 34,792,306 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1934,781,856 - 34,792,578 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1941,597,754 - 41,607,825 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01942,251,094 - 42,261,165 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01944,550,218 - 44,560,287 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Cytogenetic Map19q12NCBI
Derpc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934940,304,392 - 40,306,889 (+)NCBIHiC_Itri_2
DERPC
(Sus scrofa - pig)		 No map positions available.

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Variants in Derpc
628 total Variants

1 to 10 of 33 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300560Tgl1_mtriglyceride level 1 (mouse)Not determined8102486208111650036Mouse
4141435Fbtq3_mfemoral bone trait QTL 3 (mouse)Not determined8100965309130127694Mouse
11252141Fdr2_mfat response to dietary restriction 2 (mouse)898390634130127694Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined876411976110412125Mouse
1302105Im1_mImmunoregulatory 1 (mouse)Not determined899828531130127694Mouse
1301080Sluc9_msusceptibility to lung cancer 9 (mouse)Not determined899828531130127694Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined835109930115563747Mouse
14746994Manh65_mmandible shape 65 (mouse)8106489629130127694Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined876411976110412125Mouse
1301766Desp1_mdespair 1 (mouse)Not determined885486208119486373Mouse

1 to 10 of 33 rows






Ensembl Acc Id: ENSMUST00000169312   ⟹   ENSMUSP00000129823
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8107,610,522 - 107,620,225 (-)Ensembl
Ensembl Acc Id: ENSMUST00000176437
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8107,612,937 - 107,620,223 (-)Ensembl
RefSeq Acc Id: NM_001378376   ⟹   NP_001365305
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398107,610,495 - 107,620,225 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001378377   ⟹   NP_001365306
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398107,610,495 - 107,620,225 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001378378   ⟹   NP_001365307
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398107,610,495 - 107,620,225 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001378379   ⟹   NP_001365308
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398107,610,495 - 107,620,225 (-)NCBI
Sequence:
1 to 10 of 10 rows
Protein RefSeqs NP_001365305 (Get FASTA)   NCBI Sequence Viewer  
  NP_001365306 (Get FASTA)   NCBI Sequence Viewer  
  NP_001365307 (Get FASTA)   NCBI Sequence Viewer  
  NP_001365308 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH23107 (Get FASTA)   NCBI Sequence Viewer  
  BAC27186 (Get FASTA)   NCBI Sequence Viewer  
  BAC40241 (Get FASTA)   NCBI Sequence Viewer  
  BAE38506 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000129823
GenBank Protein P0CG14 (Get FASTA)   NCBI Sequence Viewer  
1 to 10 of 10 rows
RefSeq Acc Id: NP_001365307   ⟸   NM_001378378
- UniProtKB: P0CG14 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001365308   ⟸   NM_001378379
- UniProtKB: P0CG14 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001365305   ⟸   NM_001378376
- UniProtKB: P0CG14 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001365306   ⟸   NM_001378377
- UniProtKB: P0CG14 (UniProtKB/Swiss-Prot)
Ensembl Acc Id: ENSMUSP00000129823   ⟸   ENSMUST00000169312

Name Modeler Protein Id AA Range Protein Structure
AF-P0CG14-F1-model_v2 AlphaFold P0CG14 1-533 view protein structure



Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000117748 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000169312 ENTREZGENE
MGD MGI:6303050 ENTREZGENE
NCBI Gene Derpc ENTREZGENE
PhenoGen Derpc PhenoGen
UniProt P0CG14 ENTREZGENE