Gm57563 (predicted gene, 57563) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Gm57563 (predicted gene, 57563) Mus musculus
Analyze
Symbol: Gm57563 (Ensembl: Gm54782)
Name: predicted gene, 57563 (Ensembl:predicted gene, 54782)
RGD ID: 39128716
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
Previously known as: LOC115487634; U7 small nuclear RNA
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391188,816,510 - 188,816,573 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl385,870,078 - 85,870,139 (-)EnsemblGRCm39 Ensembl
GRCm381189,084,313 - 189,084,376 (-)NCBIGRCm38GRCm38mm10GRCm38
Cytogenetic Map1H6NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




.

.
Variants in Gm57563
5 total Variants

1 to 10 of 64 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
4141245Cq2_mcholesterol QTL 2 (mouse)Not determined1157456299191456436Mouse
4141244Bmd5c_mbone mineral density 5c (mouse)Not determined155526796189526897Mouse
1558802Skmw6_mskeletal muscle weight 6 (mouse)Not determined1167954584195154279Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
1301652Cpfd2_mcerebellum pattern fissures (mouse)Not determined1172303451195154279Mouse
12790987Tgl5_mtriglyceride 5 (mouse)1160097157194097157Mouse
4142389Scfr1_mstem cell frequency regulator 1 (mouse)Not determined171632048189303617Mouse
1300888Berr1_mberghei resistance locus 1 (mouse)Not determined1164143227190534272Mouse
12790988Phdlc5_mplasma HDL cholesterol 5 (mouse)9160097157194097157Mouse

1 to 10 of 64 rows





RefSeq Transcripts XR_004936747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC121882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000158452
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl385,870,078 - 85,870,139 (-)Ensembl
RefSeq Acc Id: XR_004936747
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,816,510 - 188,816,573 (-)NCBI
Sequence:


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000118701 Ensembl
MGD MGI:7512081 ENTREZGENE
NCBI Gene LOC115487634 ENTREZGENE
PhenoGen Gm57563 PhenoGen
RNAcentral URS0000A7C6EE RNACentral


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-08-22 Gm57563  predicted gene, 57563  LOC115487634  U7 small nuclear RNA  Symbol and/or name change 5135510 APPROVED