TUBB1P2 (tubulin beta 1 class VI pseudogene 2) - Rat Genome Database

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Gene: TUBB1P2 (tubulin beta 1 class VI pseudogene 2) Homo sapiens
Analyze
Symbol: TUBB1P2
Name: tubulin beta 1 class VI pseudogene 2
RGD ID: 3566506
HGNC Page HGNC:23981
Description:
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: TUBB1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38Y17,516,596 - 17,519,431 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblY17,516,836 - 17,519,038 (-)EnsemblGRCh38hg38GRCh38
GRCh37Y19,628,476 - 19,631,311 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36Y18,137,870 - 18,140,705 (-)NCBINCBI36Build 36hg18NCBI36
Cytogenetic MapYq11.222NCBI
T2T-CHM13v2.0Y18,423,132 - 18,425,967 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:9847074   PMID:12815422  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:107
Count of miRNA genes:106
Interacting mature miRNAs:107
Transcripts:ENST00000422712
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system adipose tissue appendage
High
Medium
Low
Below cutoff 5 10 4 5 15 1 7 2 2 5 3 10

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000422712
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblY17,516,836 - 17,519,038 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC TUBB1P2 COSMIC
Ensembl Genes ENSG00000228578 Ensembl
GTEx ENSG00000228578 GTEx
HGNC ID HGNC:23981 ENTREZGENE
Human Proteome Map TUBB1P2 Human Proteome Map
NCBI Gene 140004 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-22 TUBB1P2  tubulin beta 1 class VI pseudogene 2    tubulin, beta 1 class VI pseudogene 2  Symbol and/or name change 5135510 APPROVED
2013-02-06 TUBB1P2  tubulin, beta 1 class VI pseudogene 2    tubulin, beta 1 pseudogene 2  Symbol and/or name change 5135510 APPROVED