RNF228 (ring finger protein 228) - Rat Genome Database

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Gene: RNF228 (ring finger protein 228) Pan paniscus
Analyze
Symbol: RNF228
Name: ring finger protein 228
RGD ID: 329331101
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC129397309; RING finger protein 223
RGD Orthologs
Human
Mouse
Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213124,933,665 - 124,935,849 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B124,948,388 - 124,950,716 (-)NCBINHGRI_mPanPan1


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
RNF228
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213124,933,665 - 124,935,849 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B124,948,388 - 124,950,716 (-)NCBINHGRI_mPanPan1
RNF228
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382222,314,148 - 222,320,155 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2222,317,242 - 222,320,208 (-)NCBIGRCh38hg38GRCh38
GRCh372223,178,867 - 223,184,874 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map2q36.1NCBI
T2T-CHM13v2.02222,799,269 - 222,805,278 (-)NCBIT2T-CHM13v2.0
Gm2102
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39178,191,601 - 78,194,907 (-)NCBIGRCm39GRCm39mm39
GRCm38178,214,964 - 78,218,270 (-)NCBIGRCm38GRCm38mm10GRCm38
MGSCv37178,213,164 - 78,214,860 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36178,213,164 - 78,214,860 (-)NCBIMGSCv36mm8
Cytogenetic Map1C4NCBI
cM Map139.94NCBI
LOC108351956
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8987,129,969 - 87,133,195 (-)NCBIGRCr8
mRatBN7.2979,681,478 - 79,684,988 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.0984,123,346 - 84,127,117 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Celera977,193,523 - 77,197,294 (-)NCBICelera
Cytogenetic Map9q33NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_055109140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_055109140   ⟹   XP_054965115
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v213124,933,665 - 124,935,849 (-)NCBI
NHGRI_mPanPan12B124,948,388 - 124,950,716 (-)NCBI
Protein Sequences
Protein RefSeqs XP_054965115 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_054965115   ⟸   XM_055109140


Additional Information

Database Acc Id Source(s)
NCBI Gene LOC129397309 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-03-06 RNF228  ring finger protein 228  LOC129397309  RING finger protein 223  Symbol and/or name change 5135510 APPROVED