LOC117977623 (large ribosomal subunit protein eL20-like) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: LOC117977623 (large ribosomal subunit protein eL20-like) Pan paniscus
Analyze
Symbol: LOC117977623
Name: large ribosomal subunit protein eL20-like
RGD ID: 32731761
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN translation (inferred); FOUND IN cytosolic large ribosomal subunit (inferred); ribonucleoprotein complex (inferred); ribosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L18a-like
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X153,700,892 - 153,702,900 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X153,704,467 - 153,706,505 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X143,211,660 - 143,213,277 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034949916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_034949916   ⟹   XP_034805807
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X153,700,892 - 153,702,900 (+)NCBI
NHGRI_mPanPan1X153,704,467 - 153,706,505 (+)NCBI
Mhudiblu_PPA_v0X143,211,660 - 143,213,277 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034805807 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000039748.1
Reference Protein Sequences
RefSeq Acc Id: XP_034805807   ⟸   XM_034949916
- UniProtKB: A0A2R9CFF5 (UniProtKB/TrEMBL)
Protein Domains
Large ribosomal subunit protein eL20


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000042559 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000062660.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.20.10 UniProtKB/TrEMBL
InterPro 50S_L18Ae/Ribosomal_L18a/L20 UniProtKB/TrEMBL
  Ribosomal_L18a//L18Ae/LX UniProtKB/TrEMBL
  Ribosomal_L18a/L20_eukaryotes UniProtKB/TrEMBL
NCBI Gene LOC117977623 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L18A UniProtKB/TrEMBL
  60S RIBOSOMAL PROTEIN L18A UniProtKB/TrEMBL
Pfam Ribosomal_L18A UniProtKB/TrEMBL
PIRSF Ribosomal_L18a UniProtKB/TrEMBL
Superfamily-SCOP RplX-like UniProtKB/TrEMBL
UniProt A0A2R9CFF5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-03-13 LOC117977623  large ribosomal subunit protein eL20-like  LOC117977623  60S ribosomal protein L18a-like  Symbol and/or name change 5135510 APPROVED