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Gene: TMEM253 (transmembrane protein 253) Pan paniscus

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Symbol:

TMEM253

Name:

transmembrane protein 253

RGD ID:

32730035

Description:

ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); purine nucleoside phosphorylase deficiency (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	22,550,226 - 22,554,472 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	21,766,747 - 21,770,959 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	1,913,655 - 1,917,874 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Brain-Lung-Thyroid Syndrome (ISO)

purine nucleoside phosphorylase deficiency (ISO)

References

Genomics

Comparative Map Data

TMEM253
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	22,550,226 - 22,554,472 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	21,766,747 - 21,770,959 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	1,913,655 - 1,917,874 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

TMEM253
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	21,098,836 - 21,103,724 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	21,098,811 - 21,103,724 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	21,566,995 - 21,571,883 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	20,639,343 - 20,641,723 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	14	1,427,654 - 1,432,447 (+)	NCBI		Celera
Cytogenetic Map	14	q11.2	NCBI
HuRef	14	1,687,284 - 1,692,081 (+)	NCBI		HuRef
CHM1_1	14	21,568,829 - 21,573,619 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	15,296,249 - 15,301,137 (+)	NCBI		T2T-CHM13v2.0

Tmem253
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	52,252,309 - 52,257,244 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	52,253,115 - 52,257,251 (+)	Ensembl		GRCm39 Ensembl
GRCm38	14	52,014,852 - 52,019,787 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	52,015,658 - 52,019,794 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	52,636,540 - 52,639,462 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	50,938,816 - 50,941,740 (+)	NCBI		MGSCv36	mm8
Celera	14	48,996,770 - 48,999,666 (+)	NCBI		Celera
Cytogenetic Map	14	C2	NCBI
cM Map	14	26.77	NCBI

Tmem253
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	27,180,029 - 27,182,607 (+)	NCBI		GRCr8
mRatBN7.2	15	24,706,517 - 24,709,107 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	24,706,529 - 24,708,625 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	15	28,413,414 - 28,416,039 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	28,413,461 - 28,415,554 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	32,221,865 - 32,226,503 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	27,445,186 - 27,447,282 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	15	25,011,020 - 25,013,645 (+)	NCBI		Celera
Cytogenetic Map	15	p14	NCBI

Tmem253
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955550	1,862,719 - 1,866,822 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955550	1,862,781 - 1,867,230 (+)	NCBI	ChiLan1.0	ChiLan1.0

TMEM253
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	18,187,622 - 18,194,700 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	18,187,616 - 18,193,427 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	18,671,660 - 18,685,505 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	18,447,013 - 18,460,567 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	18,450,237 - 18,452,076 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	18,128,293 - 18,142,133 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	18,184,255 - 18,198,096 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	18,312,210 - 18,326,061 (+)	NCBI		UU_Cfam_GSD_1.0

Tmem253
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	32,393,443 - 32,398,684 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936880	304,740 - 306,616 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936880	302,889 - 307,007 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TMEM253
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	78,030,446 - 78,032,537 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	77,991,665 - 78,033,146 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

TMEM253
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	29	21,573,831 - 21,577,932 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	29	21,574,780 - 21,576,691 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666059	24,858,547 - 24,860,919 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tmem253
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624825	7,095,542 - 7,097,636 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624825	7,093,627 - 7,098,746 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_063596458	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_004666085	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_063596458 ⟹ XP_063452528

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	15	22,550,226 - 22,553,947 (+)	NCBI

RefSeq Acc Id:

XR_004666085

Type:

NON-CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	15	22,553,335 - 22,554,472 (+)	NCBI
NHGRI_mPanPan1	14	21,769,822 - 21,770,959 (+)	NCBI
Mhudiblu_PPA_v0	14	1,916,737 - 1,917,874 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_063452528	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_063452528 ⟸ XM_063596458

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	TMEM253	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar