LOC117981631 (elongation factor 1-alpha 1) - Rat Genome Database
Welcome
Sign In
Message Center
1 Messages
Go to Message Center
Watched Genes
Watched Ontology Terms
×
Save List to My RGD
Create Name:
Description:
You must be logged in to use this feature
Subscribe to Updates
Select categories you would like to watch. Updates to this gene will be sent to Sign In
Analyze List
×
Gene Annotator (Functional Annotation)
unavailable
Gene Annotator (Annotation Distribution)
unavailable
Variant Visualizer (Genomic Variants)
unavailable
InterViewer (Protein-Protein Interactions)
unavailable
Gviewer (Genome Viewer)
unavailable
Variant Visualizer (Damaging Variants)
unavailable
Gene Annotator (Annotation Comparison)
unavailable
OLGA (Gene List Generator)
unavailable
Excel (Download)
MOET (Multi-Ontology Enrichement)
unavailable
GOLF (Gene-Ortholog Location Finder)
unavailable
x
Send Message
x
Send us a Message
Your email
Message
Send
Submit Data
|
Help
|
Video Tutorials
|
News
|
Publications
|
Download
|
REST API
|
Citing RGD
|
Contact
Home
Search RGD
Grant Resources
Citing RGD
About Us
Contact Us
Data
Genes
Variants
Community Projects
QTLs
Strains
Markers
Genome Information
Ontologies
Cell Lines
References
Download
Submit Data
Analysis & Visualization
OntoMate (Literature Search)
JBrowse (Genome Browser)
Synteny Browser (VCMap)
Variant Visualizer
Multi-Ontology Enrichment (MOET)
Gene-Ortholog Location Finder (GOLF)
InterViewer (Protein-Protein Interactions)
PhenoMiner (Quatitative Phenotypes)
Gene Annotator
OLGA (Gene List Generator)
AllianceMine
GViewer (Genome Viewer)
Diseases
Aging & Age-Related Disease
Cancer & Neoplastic Disease
Cardiovascular Disease
Coronavirus Disease
Developmental Disease
Diabetes
Hematologic Disease
Immune & Inflammatory Disease
Infectious Disease
Liver Disease
Neurological Disease
Obesity & Metabolic Syndrome
Renal Disease
Respiratory Disease
Sensory Organ Disease
Phenotypes & Models
Find Models
Genetic Models
Autism Models
Rat PhenoMiner (Quantitative Phenotypes)
Chinchilla PhenoMiner
Expected Ranges (Quantitative Phenotype)
PhenoMiner Term Comparison
Hybrid Rat Diversity Panel
Phenotypes
Phenotypes in Other Animal Models
Animal Husbandry
Strain Medical Records
Phylogenetics
Strain Availability
Calendar
Rats 101
Submissions
Photo Archive
Pathways
Community
Rat Community Forum
Directory of Rat Laboratories
Video Tutorials
News
RGD Publications
RGD Presentations Archive
Nomenclature Guidelines
Resource Links
Laboratory Resources
Employment Resources
Advanced Search (OLGA)
Summary
Annotation
Gene Ontology
References
PubMed References
Genomics
Expression
RNA-SEQ Expression
Sequence
Nucleotide Sequences
Reference Sequences
Protein Sequences
Reference Protein Sequences
Protein Domains
Additional Information
External Database Links
Nomenclature History
Gene: LOC117981631 (elongation factor 1-alpha 1) Pan paniscus
Subscribe to Updates
Analyze
General
Array IDs
Symbol:
LOC117981631
Name:
elongation factor 1-alpha 1
RGD ID:
32729327
Description:
ENCODES a protein that exhibits GTP binding (inferred); GTPase activity (inferred); translation elongation factor activity (inferred); INVOLVED IN translation (inferred); translational elongation (inferred)
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
elongation factor 1-alpha 1-like
Latest Assembly:
Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo Assembly
Chr
Position (strand)
Source
Genome Browsers
JBrowse
NCBI
UCSC
Ensembl
NHGRI_mPanPan1-v2
11
117,835,065 - 117,836,801 (-)
NCBI
NHGRI_mPanPan1-v2
NHGRI_mPanPan1
9
117,841,012 - 117,842,747 (-)
NCBI
NHGRI_mPanPan1
Mhudiblu_PPA_v0
9
6,554,959 - 6,560,895 (+)
NCBI
Mhudiblu_PPA_v0
Mhudiblu_PPA_v0
panPan3
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Annotation
Click to see Annotation Summary View
Gene Ontology Annotations
Click to see Annotation Summary View
Biological Process
1 to 3 of 3 rows
10
20
30
40
100
All Rows
Only show annotations with direct experimental evidence (0 objects hidden)
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
LOC117981631
Bonobo
translation
involved_in
IEA
UniProtKB-KW:KW-0648
150520179
UniProt
GO_REF:0000043
LOC117981631
Bonobo
translational elongation
involved_in
IEA
InterPro:IPR004539
150520179
InterPro
GO_REF:0000002
LOC117981631
Bonobo
translational elongation
involved_in
IEA
UniProtKB-KW:KW-0251
150520179
UniProt
GO_REF:0000043
1 to 3 of 3 rows
10
20
30
40
100
All Rows
Molecular Function
1 to 5 of 5 rows
10
20
30
40
100
All Rows
Only show annotations with direct experimental evidence (0 objects hidden)
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
LOC117981631
Bonobo
GTP binding
enables
IEA
InterPro:IPR000795
more ...
150520179
InterPro
GO_REF:0000002
LOC117981631
Bonobo
GTP binding
enables
IEA
UniProtKB-KW:KW-0342
150520179
UniProt
GO_REF:0000043
LOC117981631
Bonobo
GTPase activity
enables
IEA
InterPro:IPR000795
150520179
InterPro
GO_REF:0000002
LOC117981631
Bonobo
translation elongation factor activity
enables
IEA
InterPro:IPR004539
150520179
InterPro
GO_REF:0000002
LOC117981631
Bonobo
translation elongation factor activity
enables
IEA
UniProtKB-KW:KW-0251
150520179
UniProt
GO_REF:0000043
1 to 5 of 5 rows
10
20
30
40
100
All Rows
Gene Ontology Annotations
Click to see Annotation Summary View
Biological Process
1 to 1 of 1 rows
10
20
30
40
100
All Rows
translation
(IEA)
translational elongation
(IEA)
1 to 1 of 1 rows
10
20
30
40
100
All Rows
Molecular Function
1 to 1 of 1 rows
10
20
30
40
100
All Rows
GTP binding
(IEA)
GTPase activity
(IEA)
translation elongation factor activity
(IEA)
1 to 1 of 1 rows
10
20
30
40
100
All Rows
References
Additional References at PubMed
1 to 1 of 1 rows
10
20
30
40
100
All Rows
PMID:
22301074
PMID:
30032202
1 to 1 of 1 rows
10
20
30
40
100
All Rows
Genomics
.
Expression
RNA-SEQ Expression
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Download All Expressed Objects for this Gene
Too many to show, limit is 500. Download them if you would like to view them all.
Strain/Cell Line
(Click to sort Ascending)
Sex
(Click to sort Ascending)
Age
(Click to sort Ascending)
Tissue
(Click to sort Ascending)
Geo Sample Id
(Click to sort Ascending)
Value
(Click to sort Ascending)
Unit
(Click to sort Ascending)
Assembly
(Click to sort Ascending)
Reference
(Click to sort Ascending)
Sequence
Nucleotide Sequences
1 to 5 of 5 rows
3
5
10
20
30
100
All Rows
RefSeq Transcripts
XM_034967122
(Get FASTA)
NCBI Sequence Viewer
Search GEO for Microarray Profiles
XM_034967123
(Get FASTA)
NCBI Sequence Viewer
Search GEO for Microarray Profiles
XM_034967124
(Get FASTA)
NCBI Sequence Viewer
Search GEO for Microarray Profiles
XM_034967125
(Get FASTA)
NCBI Sequence Viewer
Search GEO for Microarray Profiles
GenBank Nucleotide
JARIFH020000011
(Get FASTA)
NCBI Sequence Viewer
Search GEO for Microarray Profiles
1 to 5 of 5 rows
3
5
10
20
30
100
All Rows
Reference Sequences
0 to 0 of 0 rows
3
5
10
20
100
All Rows
RefSeq Acc Id:
XM_034967125 ⟹ XP_034823016
Type:
CODING
Position:
Bonobo Assembly
Chr
Position (strand)
Source
NHGRI_mPanPan1-v2
11
117,835,065 - 117,836,801 (-)
NCBI
NHGRI_mPanPan1
9
117,841,012 - 117,842,747 (-)
NCBI
Mhudiblu_PPA_v0
9
6,554,959 - 6,560,895 (+)
NCBI
0 to 0 of 0 rows
3
5
10
20
100
All Rows
Protein Sequences
1 to 2 of 2 rows
10
20
30
40
100
All Rows
Protein RefSeqs
XP_034823016
(Get FASTA)
NCBI Sequence Viewer
Ensembl Protein
ENSPPAP00000016167.1
1 to 2 of 2 rows
10
20
30
40
100
All Rows
Reference Protein Sequences
1 to 1 of 1 rows
3
5
10
20
100
All Rows
1 to 1 of 1 rows
3
5
10
20
100
All Rows
RefSeq Acc Id:
XP_034823016 ⟸ XM_034967125
- UniProtKB:
A0A2R9AFQ8
(UniProtKB/TrEMBL)
Protein Domains
tr-type G
Additional Information
External Database Links
1 to 24 of 24 rows
3
5
10
20
40
100
All Rows
Database
Acc Id
Source(s)
Ensembl Genes
ENSPPAG00000031191
UniProtKB/TrEMBL
Ensembl Transcript
ENSPPAT00000038860.1
UniProtKB/TrEMBL
Gene3D-CATH
P-loop containing nucleotide triphosphate hydrolases
UniProtKB/TrEMBL
Translation factors
UniProtKB/TrEMBL
InterPro
EFTu-like_2
UniProtKB/TrEMBL
GTP-eEF1A_C
UniProtKB/TrEMBL
P-loop_NTPase
UniProtKB/TrEMBL
T_Tr_GTP-bd_dom
UniProtKB/TrEMBL
TRAFAC_GTPase_members
UniProtKB/TrEMBL
Transl_B-barrel_sf
UniProtKB/TrEMBL
Transl_elong_EF1A/Init_IF2_C
UniProtKB/TrEMBL
Transl_elong_EF1A_euk/arc
UniProtKB/TrEMBL
NCBI Gene
LOC117981631
ENTREZGENE
PANTHER
ELONGATION FACTOR 1-ALPHA 1-RELATED
UniProtKB/TrEMBL
TRANSLATION FACTOR
UniProtKB/TrEMBL
Pfam
GTP-eEF1A_C
UniProtKB/TrEMBL
GTP_EFTU
UniProtKB/TrEMBL
GTP_EFTU_D2
UniProtKB/TrEMBL
PRINTS
ELONGATNFCT
UniProtKB/TrEMBL
PROSITE
G_TR_2
UniProtKB/TrEMBL
Superfamily-SCOP
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
UniProtKB/TrEMBL
P-loop containing nucleoside triphosphate hydrolases
UniProtKB/TrEMBL
Translation proteins
UniProtKB/TrEMBL
UniProt
A0A2R9AFQ8
ENTREZGENE, UniProtKB/TrEMBL
1 to 24 of 24 rows
3
5
10
20
40
100
All Rows
Nomenclature History
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2023-04-25
LOC117981631
elongation factor 1-alpha 1
LOC117981631
elongation factor 1-alpha 1-like
Symbol and/or name change
5135510
APPROVED