PARP4P2 (poly(ADP-ribose) polymerase family member 4 pseudogene 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: PARP4P2 (poly(ADP-ribose) polymerase family member 4 pseudogene 2) Homo sapiens
Analyze
Symbol: PARP4P2
Name: poly(ADP-ribose) polymerase family member 4 pseudogene 2
RGD ID: 3207651
HGNC Page HGNC:37760
Description: INTERACTS WITH vitamin E
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: INFERRED
Previously known as: KIAA1074
Related Functional Gene: PARP4  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381319,349,131 - 19,408,148 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1319,349,137 - 19,407,962 (+)EnsemblGRCh38hg38GRCh38
GRCh371319,923,271 - 19,982,288 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361318,857,638 - 18,880,293 (+)NCBINCBI36Build 36hg18NCBI36
Celera13985,133 - 1,044,155 (+)NCBICelera
Cytogenetic Map13q12.11NCBI
HuRef13728,115 - 787,150 (+)NCBIHuRef
CHM1_11319,891,330 - 19,950,351 (+)NCBICHM1_1
T2T-CHM13v2.01318,545,139 - 18,604,241 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PARP4P2Humanvitamin E decreases expressionEXP 6480464Vitamin E results in decreased expression of PARP4P2 mRNACTDPMID:19244175



.

.
Variants in PARP4P2
2 total Variants

Predicted Target Of
Summary Value
Count of predictions:24
Count of miRNA genes:23
Interacting mature miRNAs:23
Transcripts:ENST00000446672
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597474169GWAS1570243_Hcleft lip QTL GWAS1570243 (human)0.0000006cleft lip131940486019404861Human
597493972GWAS1590046_HCOVID-19 QTL GWAS1590046 (human)0.000006COVID-19131934928019349281Human
597492503GWAS1588577_HS-warfarin measurement QTL GWAS1588577 (human)0.000001S-warfarin measurement131937731519377316Human
597599988GWAS1656848_Hhuman papilloma virus infection QTL GWAS1656848 (human)1e-08human papilloma virus infection131938599319385994Human
597480294GWAS1576368_Hliver fibrosis measurement QTL GWAS1576368 (human)0.000008liver integrity trait (VT:0010547)liver fibrotic lesion measurement (CMO:0001088)131939809319398094Human
597599989GWAS1656849_Hhuman papilloma virus infection QTL GWAS1656849 (human)4e-08human papilloma virus infection131938247519382476Human

SHGC-58546  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371319,955,364 - 19,955,455UniSTSGRCh37
GRCh371325,021,190 - 25,021,281UniSTSGRCh37
Build 361318,853,364 - 18,853,455RGDNCBI36
Celera131,017,369 - 1,017,460RGD
Celera136,084,510 - 6,084,601UniSTS
Cytogenetic Map13q12.11UniSTS
Cytogenetic Map13q11UniSTS
HuRef135,833,446 - 5,833,537UniSTS
HuRef13760,367 - 760,458UniSTS
TNG Radiation Hybrid Map13102.0UniSTS
D13S979  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371319,927,161 - 19,927,389UniSTSGRCh37
Build 361318,825,161 - 18,825,389RGDNCBI36
Celera13989,039 - 989,267RGD
Cytogenetic Map13q12.11UniSTS
HuRef13732,027 - 732,255UniSTS
A010A27  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371325,005,575 - 25,005,683UniSTSGRCh37
GRCh371319,971,902 - 19,972,010UniSTSGRCh37
Build 361318,869,902 - 18,870,010RGDNCBI36
Celera136,068,897 - 6,069,005RGD
Cytogenetic Map13q11UniSTS
Cytogenetic Map13q12.11UniSTS
HuRef135,817,837 - 5,817,945UniSTS
GeneMap99-GB4 RH Map1360.17UniSTS
G66112  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37Y28,754,516 - 28,754,829UniSTSGRCh37
CeleraY9,686,321 - 9,686,634RGD
Celera131,037,058 - 1,037,362UniSTS
Cytogenetic MapYq11.23UniSTS
Cytogenetic Map13q12.11UniSTS
HuRefY19,218,324 - 19,218,637UniSTS
HuRef13780,058 - 780,362UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
690 1320 1385 900 2812 832 1165 233 1105 129 1085 3360 3174 25 2378 395 1001 906 106



Ensembl Acc Id: ENST00000446672
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1319,349,137 - 19,407,962 (+)Ensembl
RefSeq Acc Id: XR_017036
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
Build 361318,857,638 - 18,880,293 (+)NCBI Archive


Database
Acc Id
Source(s)
COSMIC PARP4P2 COSMIC
Ensembl Genes ENSG00000224976 Ensembl, ENTREZGENE
GTEx ENSG00000224976 GTEx
HGNC ID HGNC:37760 ENTREZGENE
Human Proteome Map PARP4P2 Human Proteome Map
NCBI Gene 645771 ENTREZGENE


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-24 PARP4P2  poly(ADP-ribose) polymerase family member 4 pseudogene 2    poly(ADP-ribose) polymerase family, member 4 pseudogene 2  Symbol and/or name change 5135510 APPROVED
2015-11-10 PARP4P2  poly(ADP-ribose) polymerase family, member 4 pseudogene 2    poly (ADP-ribose) polymerase family, member 4 pseudogene 2  Symbol and/or name change 5135510 APPROVED