MESTP4 (mesoderm specific transcript pseudogene 4) - Rat Genome Database

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Gene: MESTP4 (mesoderm specific transcript pseudogene 4) Homo sapiens
Analyze
Symbol: MESTP4
Name: mesoderm specific transcript pseudogene 4
RGD ID: 3132381
HGNC Page HGNC:38554
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: MEST  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38329,087,346 - 29,089,616 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl329,087,396 - 29,088,599 (+)EnsemblGRCh38hg38GRCh38
GRCh37329,128,837 - 29,131,107 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36329,103,832 - 29,104,883 (+)NCBINCBI36Build 36hg18NCBI36
Celera329,065,716 - 29,066,767 (+)NCBICelera
Cytogenetic Map3p24.1NCBI
HuRef329,070,112 - 29,072,382 (+)NCBIHuRef
CHM1_1329,078,956 - 29,081,226 (+)NCBICHM1_1
T2T-CHM13v2.0329,089,370 - 29,091,640 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


PMID:22747683  



.

Predicted Target Of
Summary Value
Count of predictions:58
Count of miRNA genes:58
Interacting mature miRNAs:58
Transcripts:ENST00000412333
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2316061GLUCO194_HGlucose level QTL 194 (human)0.02Glucose level32338077449380774Human




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
125 43 96 72 289 83 98 11 44 3 95 233 292 1 269 40 226 77 9


RefSeq Transcripts NG_028940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC097361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000412333
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl329,087,396 - 29,088,599 (+)Ensembl


Database
Acc Id
Source(s)
COSMIC MESTP4 COSMIC
Ensembl Genes ENSG00000215004 Ensembl
GTEx ENSG00000215004 GTEx
HGNC ID HGNC:38554 ENTREZGENE
Human Proteome Map MESTP4 Human Proteome Map
NCBI Gene 131572 ENTREZGENE


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-12-12 MESTP4  mesoderm specific transcript pseudogene 4    mesoderm specific transcript homolog (mouse) pseudogene 4  Symbol and/or name change 5135510 APPROVED