RHOT1P2 (ras homolog family member T1 pseudogene 2) - Rat Genome Database

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Gene: RHOT1P2 (ras homolog family member T1 pseudogene 2) Homo sapiens
Analyze
Symbol: RHOT1P2
Name: ras homolog family member T1 pseudogene 2
RGD ID: 3051026
HGNC Page HGNC:37838
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: RHOT1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382113,936,993 - 13,937,525 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2113,936,993 - 13,937,325 (-)EnsemblGRCh38hg38GRCh38
GRCh372115,309,314 - 15,309,846 (-)NCBIGRCh37GRCh37hg19GRCh37
Celera13470,612 - 470,944 (-)NCBICelera
Cytogenetic Map21q11.2NCBI
HuRef21705,971 - 706,303 (-)NCBIHuRef
CHM1_1215,868,212 - 5,868,544 (-)NCBICHM1_1
T2T-CHM13v2.02112,281,120 - 12,281,652 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:280
Count of miRNA genes:262
Interacting mature miRNAs:276
Transcripts:ENST00000366423
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2 9 31 5 32 9 1 31
Low 253 119 264 51 246 11 992 103 1019 64 636 374 41 466 617
Below cutoff 876 671 617 154 394 85 1170 528 1201 128 345 641 73 420 635 3

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000366423
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2113,936,993 - 13,937,325 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RHOT1P2 COSMIC
Ensembl Genes ENSG00000203616 Ensembl
GTEx ENSG00000203616 GTEx
HGNC ID HGNC:37838 ENTREZGENE
Human Proteome Map RHOT1P2 Human Proteome Map
NCBI Gene 100462811 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-03-01 RHOT1P2  ras homolog family member T1 pseudogene 2  RHOT1P2  ras homolog gene family, member T1 pseudogene 2  Symbol and/or name change 5135510 APPROVED