RNU6-21P (RNA, U6 small nuclear 21, pseudogene) - Rat Genome Database

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Gene: RNU6-21P (RNA, U6 small nuclear 21, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-21P
Name: RNA, U6 small nuclear 21, pseudogene
RGD ID: 2312694
HGNC Page HGNC:34265
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
Previously known as: RNU6-21
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381662,187,540 - 62,187,646 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1662,187,540 - 62,187,646 (-)EnsemblGRCh38hg38GRCh38
GRCh371662,221,444 - 62,221,550 (-)NCBIGRCh37GRCh37hg19GRCh37
Celera1646,725,018 - 46,725,124 (-)NCBICelera
Cytogenetic Map16q21NCBI
HuRef1648,090,828 - 48,090,934 (-)NCBIHuRef
CHM1_11663,628,875 - 63,628,981 (-)NCBICHM1_1
T2T-CHM13v2.01667,975,308 - 67,975,414 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:67
Count of miRNA genes:66
Interacting mature miRNAs:67
Transcripts:ENST00000384710
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue appendage
High
Medium
Low 1 1 3 5 2 2
Below cutoff 1 2 3 5 4 63 6 1 1 3

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000384710
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1662,187,540 - 62,187,646 (-)Ensembl
RefSeq Acc Id: NR_028369
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381662,187,540 - 62,187,646 (-)NCBI
GRCh371662,221,444 - 62,221,550 (-)RGD
Celera1646,725,018 - 46,725,124 (-)RGD
HuRef1648,090,828 - 48,090,934 (-)RGD
CHM1_11663,628,875 - 63,628,981 (-)NCBI

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-21P COSMIC
Ensembl Genes ENSG00000207441 Ensembl, ENTREZGENE
GTEx ENSG00000207441 GTEx
HGNC ID HGNC:34265 ENTREZGENE
Human Proteome Map RNU6-21P Human Proteome Map
NCBI Gene 100302738 ENTREZGENE
PharmGKB PA164725469 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-20 RNU6-21P  RNA, U6 small nuclear 21, pseudogene  RNU6-21  RNA, U6 small nuclear 21  Symbol and/or name change 5135510 APPROVED