Adgrd2-ps (adhesion G protein-coupled receptor D2, pseudogene) - Rat Genome Database

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Gene: Adgrd2-ps (adhesion G protein-coupled receptor D2, pseudogene) Mus musculus
Analyze
Symbol: Adgrd2-ps
Name: adhesion G protein-coupled receptor D2, pseudogene
RGD ID: 2311269
MGI Page MGI
Description: ASSOCIATED WITH polycystic ovary syndrome (ortholog); INTERACTS WITH benzo[a]pyrene (ortholog); bisphenol A (ortholog); ethylparaben (ortholog)
Type: protein-coding (Ensembl: transcribed_unitary_pseudogene)
Previously known as: EG666416; Gm13585; Gm999; Gpr1; Gpr14; Gpr144-ps; OTTMUSG00000012858
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39238,559,267 - 38,579,760 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl238,561,170 - 38,578,532 (+)EnsemblGRCm39 Ensembl
GRCm38238,669,255 - 38,689,748 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl238,671,158 - 38,687,651 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl238,669,417 - 38,688,520 (+)EnsemblGRCm38mm10GRCm38
MGSCv37238,527,056 - 38,544,033 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36238,519,978 - 38,543,444 (+)NCBIMGSCv36mm8
Celera240,395,739 - 40,413,520 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map224.42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:12466851   PMID:15203201  


Genomics

Comparative Map Data
Adgrd2-ps
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39238,559,267 - 38,579,760 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl238,561,170 - 38,578,532 (+)EnsemblGRCm39 Ensembl
GRCm38238,669,255 - 38,689,748 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl238,671,158 - 38,687,651 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl238,669,417 - 38,688,520 (+)EnsemblGRCm38mm10GRCm38
MGSCv37238,527,056 - 38,544,033 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36238,519,978 - 38,543,444 (+)NCBIMGSCv36mm8
Celera240,395,739 - 40,413,520 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map224.42NCBI
ADGRD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389124,450,451 - 124,478,580 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9124,450,451 - 124,478,589 (+)EnsemblGRCh38hg38GRCh38
GRCh379127,212,730 - 127,240,859 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369126,226,359 - 126,279,200 (+)NCBINCBI36Build 36hg18NCBI36
Build 349124,292,976 - 124,318,933NCBI
Celera997,860,643 - 97,886,596 (+)NCBICelera
Cytogenetic Map9q33.3NCBI
HuRef996,826,025 - 96,851,923 (+)NCBIHuRef
CHM1_19127,362,420 - 127,388,372 (+)NCBICHM1_1
T2T-CHM13v2.09136,648,682 - 136,676,809 (+)NCBIT2T-CHM13v2.0
Adgrd2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8342,844,333 - 42,870,117 (+)NCBIGRCr8
Adgrd2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554193,656,533 - 3,678,452 (-)NCBIChiLan1.0ChiLan1.0
ADGRD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21114,878,635 - 14,903,686 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1914,880,981 - 14,906,032 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0995,575,246 - 95,601,238 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19124,092,937 - 124,118,834 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9124,092,937 - 124,118,834 (+)Ensemblpanpan1.1panPan2
LOC106557492
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1958,496,681 - 58,502,607 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha957,694,154 - 57,704,564 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0959,416,311 - 59,426,831 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1958,175,022 - 58,185,332 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0958,488,019 - 58,501,654 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0958,581,865 - 58,592,175 (-)NCBIUU_Cfam_GSD_1.0
Adgrd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947192,944,722 - 192,968,926 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493648712,728,294 - 12,733,554 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ADGRD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1265,259,617 - 265,275,248 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11265,258,847 - 265,275,288 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21299,036,517 - 299,052,631 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ADGRD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11213,669,619 - 13,693,409 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1213,670,885 - 13,692,633 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660792,384,997 - 2,408,995 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Adgrd2-ps
1115 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:207
Count of miRNA genes:191
Interacting mature miRNAs:205
Transcripts:ENSMUST00000118797
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212953766556453Mouse
12904005Cfq2_mconditioned fear QTL 2 (mouse)22702264256396228Mouse
14746979Manh51_mmandible shape 51 (mouse)22896112962961129Mouse
1300624Insq7_minsulin QTL 7 (mouse)Not determined2938444643384575Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
4142133Pbwg1.6_mpostnatal body weight growth 1.6 (mouse)Not determined3579732469797406Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse
26884438Sklq12_mskull length QTL 12, 16 week (mouse)22459001254890012Mouse
12904008Cfq6_mconditioned fear QTL 6 (mouse)23120303544508204Mouse
1301790Pcfm1_mperiosteal circumference and femur length 1 (mouse)Not determined2823629642236396Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
4142130Pgis2_mproteoglycan induced spondylitis 2 (mouse)Not determined22530805156971811Mouse
1559001Eae33_mexperimental allergic encephalomyelitis susceptibility 33 (mouse)Not determined23599167971609412Mouse
1301980Fcsa5_mfemoral cross-sectional area 5 (mouse)Not determined2767911541679261Mouse
4142447Pbwg1.7_mpostnatal body weight growth 1.7 (mouse)Not determined3579732469797406Mouse
1301376Etohc1_methanol consumption 1 (mouse)Not determined22112972555129871Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
14746997Mancz2_mmandible centroid size 2 (mouse)22896112962961129Mouse
12792980Fbmd1_mfemoral bone mineral density 1, females only (mouse)22503449245034492Mouse
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1301641Sbmd2_mspinal bone mineral density 2 (mouse)Not determined21421456748214713Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
10755513Amzn4_manatomical modifier of Zfp423 4 (mouse)2938444643384575Mouse
10449151Hdl8_mhigh density lipoprotein (HDL) level 8 (mouse)23812972567072607Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
10449150Pvldlc1_mplasma VLDL-cholesterol 1 (mouse)23812972567072607Mouse
13463470Tubisq1_mtubulointerstitial injury severity, QTL 1 (mouse)22368914557689269Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
10449145Lanq1_mlanosterol level QTL 1 (mouse)23812972567072607Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
13464253Ifvrq1_minfluenza virus resistance QTL 1 (mouse)23303449252034492Mouse
1300577Capsq1_mcapsaicin sensitivity related QTL 1 (mouse)Not determined22760206084013384Mouse
4141708Pbwg1.2_mpostnatal body weight growth 1.2 (mouse)Not determined2112972555129871Mouse
10043876Adip22_madiposity 22 (mouse)Not determined2830805142308240Mouse
4141186Pbwg1.8_mpostnatal body weight growth 1.8 (mouse)Not determined3579732469797406Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_003953794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003953795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003953813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004940899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004940900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004940901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004940902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004940903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004940904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004940905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004940906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004940907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004940908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004940909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004940910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004940911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004940912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004940913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004940914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004940915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004940916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004940917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004940918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004940919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004940920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004940921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004940922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BY015131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000118797
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl238,561,170 - 38,578,532 (+)Ensembl
GRCm38.p6 Ensembl238,671,158 - 38,688,520 (+)Ensembl
Ensembl Acc Id: ENSMUST00000152645
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl238,562,549 - 38,566,564 (+)Ensembl
GRCm38.p6 Ensembl238,672,537 - 38,676,552 (+)Ensembl
Ensembl Acc Id: ENSMUST00000239173
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl238,559,429 - 38,578,520 (+)Ensembl
GRCm38.p6 Ensembl238,669,417 - 38,688,508 (+)Ensembl
Ensembl Acc Id: ENSMUST00000239315
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl238,562,240 - 38,574,414 (+)Ensembl
GRCm38.p6 Ensembl238,672,228 - 38,684,402 (+)Ensembl
RefSeq Acc Id: XR_003953794
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39238,559,267 - 38,579,163 (+)NCBI
GRCm38238,669,255 - 38,689,151 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003953795
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39238,559,267 - 38,579,163 (+)NCBI
GRCm38238,669,255 - 38,689,151 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003953813
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39238,561,756 - 38,579,163 (+)NCBI
GRCm38238,671,744 - 38,689,151 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004940899
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39238,559,267 - 38,579,163 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004940900
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39238,559,267 - 38,579,163 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004940901
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39238,559,267 - 38,579,163 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004940902
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39238,559,267 - 38,579,163 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004940903
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39238,559,267 - 38,579,760 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004940904
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39238,559,267 - 38,579,163 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004940905
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39238,559,267 - 38,579,163 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004940906
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39238,559,267 - 38,579,163 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004940907
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39238,559,267 - 38,579,163 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004940908
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39238,559,267 - 38,579,163 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004940909
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39238,559,267 - 38,579,163 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004940910
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39238,559,267 - 38,579,163 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004940911
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39238,559,267 - 38,579,163 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004940912
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39238,559,267 - 38,579,163 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004940913
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39238,559,267 - 38,579,163 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004940914
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39238,559,267 - 38,574,424 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004940915
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39238,559,267 - 38,579,163 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004940916
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39238,559,267 - 38,574,424 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004940917
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39238,559,267 - 38,579,163 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004940918
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39238,559,267 - 38,579,163 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004940919
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39238,559,267 - 38,579,163 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004940920
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39238,559,267 - 38,579,163 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004940921
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39238,559,267 - 38,574,424 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004940922
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39238,559,267 - 38,574,424 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000083722 Ensembl
MGD MGI:2685845 ENTREZGENE
NCBI Gene Gpr144 ENTREZGENE
PhenoGen Adgrd2-ps PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-26 Adgrd2-ps  adhesion G protein-coupled receptor D2, pseudogene  Gpr144  G protein-coupled receptor 144  Symbol and/or name updated 27372883 PROVISIONAL
2024-08-21 Gpr144  G protein-coupled receptor 144  Adgrd2-ps  adhesion G protein-coupled receptor D2, pseudogene  Symbol and/or name change 5135510 APPROVED
2015-03-24 Adgrd2-ps  adhesion G protein-coupled receptor D2, pseudogene  Gpr144-ps  G protein-coupled receptor 144, pseudogene  Symbol and/or name change 5135510 APPROVED
2013-10-22 Gpr144-ps  G protein-coupled receptor 144, pseudogene  Gpr144  G protein-coupled receptor 144  Symbol and/or name change 5135510 APPROVED