Vmn1r-ps46 (vomeronasal 1 receptor, pseudogene 46) - Rat Genome Database

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Gene: Vmn1r-ps46 (vomeronasal 1 receptor, pseudogene 46) Mus musculus
Analyze
Symbol: Vmn1r-ps46
Name: vomeronasal 1 receptor, pseudogene 46
RGD ID: 2310968
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: Gm3461
Related Functional Gene: Vmn1r65  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3975,969,269 - 5,970,218 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl75,969,267 - 5,970,215 (-)EnsemblGRCm39 Ensembl
GRCm3875,966,270 - 5,967,219 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl75,966,268 - 5,967,216 (-)EnsemblGRCm38mm10GRCm38
MGSCv3775,917,872 - 5,918,821 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3675,917,872 - 5,920,244 (-)NCBIMGSCv36mm8
Celera75,708,150 - 5,709,099 (-)NCBICelera
Cytogenetic Map7A1NCBI
cM Map73.46NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:19952141   PMID:20003482  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:103
Count of miRNA genes:93
Interacting mature miRNAs:94
Transcripts:ENSMUST00000173862
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
1301115Lrdm1_mlymphoproliferation (Fas) renal disease modifier 1 (mouse)Not determined7335204824879418Mouse
12904941Edlmmq6_mextensor digitorum longus muscle mass QTL 6 (mouse)7121821047Mouse
25394570Skmw58_mskeletal muscle weight 58, TA (mouse)735524286281481Mouse
1301177Vent3_mventricular size 3 (mouse)Not determined7120511925Mouse
10054067Sle20_msystematic lupus erythematosus susceptibility 20 (mouse)Not determined7120511925Mouse
25394569Skmw57_mskeletal muscle weight 57, gastroc (mouse)7458046916687861Mouse
12904948Tammq5_mtibialis anterior muscle mass QTL 5 (mouse)7121821047Mouse
1302115Abhr3_mallergen-induced bronchial hyperresponsiveness 3 (mouse)Not determined7331599616637423Mouse
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7243169636431844Mouse
12904953Gmmq5_mgastrocnemius muscle mass QTL 5 (mouse)7121821047Mouse
1302188Lxw6_mlupus BXSB x NZW 6 (mouse)Not determined7121698146Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_013451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC026949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000173862
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl75,969,267 - 5,970,215 (-)Ensembl
GRCm38.p6 Ensembl75,966,268 - 5,967,216 (-)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000092271 Ensembl, ENTREZGENE
MGD MGI:3781637 ENTREZGENE
NCBI Gene 100041666 ENTREZGENE
PhenoGen Vmn1r-ps46 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Vmn1r-ps46  vomeronasal 1 receptor, pseudogene 46  Gm3461  predicted gene 3461  Symbol and/or name change 5135510 APPROVED