Potefam3c (POTE ankyrin domain family member 3C) - Rat Genome Database

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Gene: Potefam3c (POTE ankyrin domain family member 3C) Mus musculus
Analyze
No known orthologs.
Symbol: Potefam3c
Name: POTE ankyrin domain family member 3C
RGD ID: 2308296
MGI Page MGI
Description: Orthologous to human POTEJ (POTE ankyrin domain family member J). [provided by Alliance of Genome Resources, Apr 2025]
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 670593; Gm9495; Pote3c; putative POTE ankyrin domain family member M; uncharacterized protein Gm9495; uncharacterized protein Potefam3c
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39869,873,342 - 69,906,699 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl869,880,632 - 69,906,217 (-)EnsemblGRCm39 Ensembl
GRCm38869,420,690 - 69,454,048 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl869,427,980 - 69,453,565 (-)EnsemblGRCm38mm10GRCm38
MGSCv37871,953,169 - 71,977,295 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36871,944,330 - 71,977,295 (-)NCBIMGSCv36mm8
Cytogenetic Map8B3.3NCBI
cM Map833.88NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Potefam3cMousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Potefam3cMousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Potefam3cMousemolecular_function enablesND 2290270 MGIGO_REF:0000015


#
Reference Title
Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:14610273  



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Variants in Potefam3c
2215 total Variants

1 to 10 of 30 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1558870Eae36_mexperimental allergic encephalomyelitis susceptibility 36 (mouse)Not determined81477316071498244Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined866326836100326976Mouse
4141437W10q14_mweight 10 weeks QTL 14 (mouse)Not determined3250657271740637Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83663015493455280Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84809006482090180Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84924559183245673Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85892810792928107Mouse
14746987Manh64_mmandible shape 64 (mouse)85050595884505958Mouse
4141172W6q9_mweight 6 weeks QTL 9 (mouse)Not determined3250657271740637Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined835109930115563747Mouse

1 to 10 of 30 rows





RefSeq Transcripts XM_001475988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC161343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000200846   ⟹   ENSMUSP00000144411
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl869,880,632 - 69,906,217 (-)Ensembl
GRCm38.p6 Ensembl869,427,980 - 69,453,565 (-)Ensembl
RefSeq Acc Id: XM_001475988   ⟹   XP_001476038
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39869,881,907 - 69,906,696 (-)NCBI
GRCm38869,429,255 - 69,454,045 (-)NCBI
MGSCv37871,953,169 - 71,977,295 (-)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017313037   ⟹   XP_017168526
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39869,873,342 - 69,906,699 (-)NCBI
GRCm38869,420,690 - 69,454,048 (-)NCBI
Sequence:
Protein RefSeqs XP_001476038 (Get FASTA)   NCBI Sequence Viewer  
  XP_017168526 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000144411
  ENSMUSP00000144411.2
RefSeq Acc Id: XP_001476038   ⟸   XM_001475988
- Peptide Label: isoform X2
- UniProtKB: A0A0J9YUZ3 (UniProtKB/TrEMBL),   B9EK96 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017168526   ⟸   XM_017313037
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSMUSP00000144411   ⟸   ENSMUST00000200846

Name Modeler Protein Id AA Range Protein Structure
AF-A0A0J9YUZ3-F1-model_v2 AlphaFold A0A0J9YUZ3 1-350 view protein structure



1 to 21 of 21 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000107280 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000200846 ENTREZGENE
  ENSMUST00000200846.2 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
InterPro Ankyrin_repeat_domain UniProtKB/TrEMBL
  Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
KEGG Report mmu:670593 UniProtKB/TrEMBL
MGD MGI:3779905 ENTREZGENE
NCBI Gene 670593 ENTREZGENE
PANTHER ANKYRIN REPEAT DOMAIN 36-RELATED UniProtKB/TrEMBL
  ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 19-RELATED UniProtKB/TrEMBL
Pfam Ank UniProtKB/TrEMBL
  Ank_2 UniProtKB/TrEMBL
PhenoGen Potefam3c PhenoGen
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/TrEMBL
UniProt A0A0J9YUZ3 ENTREZGENE, UniProtKB/TrEMBL
  B9EK96 ENTREZGENE
1 to 21 of 21 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-09-27 Potefam3c  POTE ankyrin domain family member 3C  Pote3c  POTE ankyrin domain family member 3C  Symbol and/or name updated 27372883 PROVISIONAL
2021-09-20 Pote3c  POTE ankyrin domain family member 3C  Gm9495  predicted gene 9495  Symbol and/or name updated 27372883 PROVISIONAL