RPL29P30 (ribosomal protein L29 pseudogene 30) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: RPL29P30 (ribosomal protein L29 pseudogene 30) Homo sapiens
Analyze
Symbol: RPL29P30
Name: ribosomal protein L29 pseudogene 30
RGD ID: 2305908
HGNC Page HGNC:36601
Description:
Type: pseudo (Ensembl: transcribed_processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPL29_20_1448
Related Functional Gene: RPL29  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381570,796,517 - 70,797,146 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1570,796,631 - 70,797,099 (-)EnsemblGRCh38hg38GRCh38
GRCh371571,088,856 - 71,089,485 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361568,875,911 - 68,882,077 (-)NCBINCBI36Build 36hg18NCBI36
Celera1547,979,754 - 47,980,380 (-)NCBICelera
Cytogenetic Map15q23NCBI
HuRef1547,924,394 - 47,925,020 (-)NCBIHuRef
CHM1_11571,207,093 - 71,207,719 (-)NCBICHM1_1
T2T-CHM13v2.01568,619,447 - 68,620,076 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:19123937   PMID:21145461   PMID:30940648  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:944
Count of miRNA genes:258
Interacting mature miRNAs:270
Transcripts:ENST00000425100, ENST00000470368, ENST00000484381, ENST00000496414
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
SGC30770  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371295,861,073 - 95,861,211UniSTSGRCh37
GRCh37177,658,131 - 7,658,262UniSTSGRCh37
Build 361294,385,204 - 94,385,342RGDNCBI36
Celera1295,531,967 - 95,532,105RGD
Celera177,684,493 - 7,684,624UniSTS
Cytogenetic Map17p13UniSTS
Cytogenetic Map17p13.1UniSTS
Cytogenetic Map15q23UniSTS
Cytogenetic Map12q22UniSTS
HuRef177,551,736 - 7,551,867UniSTS
HuRef1547,924,416 - 47,924,546UniSTS
Whitehead-RH Map1779.0UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 1
Low 17 3 22 6 52 6 11 4 3 11 352 26 2 2 2
Below cutoff 951 1052 703 142 625 85 2051 794 1169 120 574 707 66 590 1341

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000470368
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1570,796,597 - 70,802,684 (-)Ensembl
RefSeq Acc Id: ENST00000484381
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1570,796,631 - 70,797,099 (-)Ensembl
RefSeq Acc Id: ENST00000496414
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1570,796,657 - 70,802,688 (-)Ensembl
RefSeq Acc Id: XM_001133831
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
Build 361568,875,923 - 68,882,077 (-)NCBI Archive
Protein Sequences
GenBank Protein EAW77858 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
COSMIC RPL29P30 COSMIC
Ensembl Genes ENSG00000235420 Ensembl
GTEx ENSG00000235420 GTEx
HGNC ID HGNC:36601 ENTREZGENE
Human Proteome Map RPL29P30 Human Proteome Map
NCBI Gene 729611 ENTREZGENE