HIGD1AP1 (HIG1 hypoxia inducible domain family member 1A pseudogene 1) - Rat Genome Database

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Gene: HIGD1AP1 (HIG1 hypoxia inducible domain family member 1A pseudogene 1) Homo sapiens
Analyze
Symbol: HIGD1AP1
Name: HIG1 hypoxia inducible domain family member 1A pseudogene 1
RGD ID: 2303458
HGNC Page HGNC:22804
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: HIG1; HIGD1D; HIGD1DP
Related Functional Gene: HIGD1A  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381253,141,976 - 53,143,304 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1253,142,053 - 53,142,327 (+)EnsemblGRCh38hg38GRCh38
GRCh371253,535,760 - 53,537,088 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361251,822,023 - 51,823,371 (+)NCBINCBI36Build 36hg18NCBI36
Celera1253,183,631 - 53,184,975 (+)NCBICelera
Cytogenetic Map12q13.13NCBI
HuRef1250,578,855 - 50,579,631 (+)NCBIHuRef
CHM1_11253,502,188 - 53,503,532 (+)NCBICHM1_1
T2T-CHM13v2.01253,106,353 - 53,107,681 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:15869325  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:40
Count of miRNA genes:38
Interacting mature miRNAs:40
Transcripts:ENST00000550979
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 1
Low 225 279 114 21 61 17 339 244 363 16 97 112 5 70 277 1
Below cutoff 1080 1227 655 213 329 135 1952 1082 1827 98 502 530 80 1 587 1363 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000550979
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1253,142,053 - 53,142,327 (+)Ensembl
RefSeq Acc Id: XM_001725669
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
Build 361251,822,023 - 51,823,371 (+)NCBI Archive

Additional Information

Database Acc Id Source(s)
COSMIC HIGD1AP1 COSMIC
Ensembl Genes ENSG00000258016 Ensembl
GTEx ENSG00000258016 GTEx
HGNC ID HGNC:22804 ENTREZGENE
Human Proteome Map HIGD1AP1 Human Proteome Map
NCBI Gene 100129086 ENTREZGENE
PharmGKB PA142671684 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-24 HIGD1AP1  HIG1 hypoxia inducible domain family member 1A pseudogene 1    HIG1 hypoxia inducible domain family, member 1A pseudogene 1  Symbol and/or name change 5135510 APPROVED
2011-09-01 HIGD1AP1  HIG1 hypoxia inducible domain family, member 1A pseudogene 1  HIGD1DP  HIG1 hypoxia inducible domain family, member 1D, pseudogene  Symbol and/or name change 5135510 APPROVED
2011-07-27 HIGD1DP  HIG1 hypoxia inducible domain family, member 1D, pseudogene  HIGD1D  HIG1 hypoxia inducible domain family, member 1D  Symbol and/or name change 5135510 APPROVED