Snord47 (small nucleolar RNA, C/D box 47) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Snord47 (small nucleolar RNA, C/D box 47) Mus musculus
Analyze
Symbol: Snord47
Name: small nucleolar RNA, C/D box 47
RGD ID: 2302609
MGI Page MGI
Description: INTERACTS WITH trovafloxacin
Type: snorna
RefSeq Status: PROVISIONAL
Previously known as: MBII-; MBII-96
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391160,865,662 - 160,865,726 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1160,865,652 - 160,865,728 (+)EnsemblGRCm39 Ensembl
GRCm381161,038,092 - 161,038,156 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1161,038,082 - 161,038,158 (+)EnsemblGRCm38mm10GRCm38
MGSCv371162,968,223 - 162,968,287 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1163,477,978 - 163,478,042 (+)NCBICelera
Cytogenetic Map1H2.1NCBI
cM Map169.75NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Snord47Mousetrovafloxacin increases expressionEXP 6480464trovafloxacin results in increased expression of SNORD47 mRNACTDPMID:35537566


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Snord47Mousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Snord47Mousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Snord47Mousemolecular_function enablesND 2290270 MGIGO_REF:0000015

PMID:11387227   PMID:11424213  



.

.
Variants in Snord47
3 total Variants

Predicted Target Of
Summary Value
Count of predictions:148
Count of miRNA genes:138
Interacting mature miRNAs:142
Transcripts:ENSMUST00000083034
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 108 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1301523Ccrs1_mcorpus callosum hemisphere surface size 1 (mouse)Not determined1139602037173602216Mouse
27226779Tibl1_mtibia length 1, 5 week (mouse)195527725162027569Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
12790987Tgl5_mtriglyceride 5 (mouse)1160097157194097157Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
12790984Pcho7_mplasma cholesterol 7 (mouse)1147219390181219390Mouse
12790988Phdlc5_mplasma HDL cholesterol 5 (mouse)9160097157194097157Mouse
27226767Tibl10_mtibia length 10, 10 week (mouse)1121727729164827569Mouse
1300740Tne1_mtotal number errors (mouse)Not determined1139602037173602216Mouse
12790996Aath2_maortic arch atherosclerosis 2 (mouse)1145077630179077630Mouse

1 to 10 of 108 rows
Gas5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381161,036,529 - 161,036,588UniSTSGRCm38
MGSCv371162,966,660 - 162,966,719UniSTSGRCm37
Celera1163,476,416 - 163,476,470UniSTS
Cytogenetic Map1H2.1UniSTS
cM Map1 UniSTS
Gas5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381161,036,288 - 161,036,385UniSTSGRCm38
MGSCv371162,966,419 - 162,966,516UniSTSGRCm37
Celera1163,476,173 - 163,476,270UniSTS
Cytogenetic Map1H2.1UniSTS







Ensembl Acc Id: ENSMUST00000083034
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1160,865,652 - 160,865,728 (+)Ensembl
GRCm38.p6 Ensembl1161,038,082 - 161,038,158 (+)Ensembl
RefSeq Acc Id: NR_028543
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391160,865,662 - 160,865,726 (+)NCBI
GRCm381161,038,092 - 161,038,156 (+)ENTREZGENE
MGSCv371162,968,223 - 162,968,287 (+)RGD
Celera1163,477,978 - 163,478,042 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RGD ID:6875440
Promoter ID:EPDNEW_M1165
Type:single initiation site
Name:Snord47_1
Description:Mus musculus small nucleolar RNA, C/D box 47 , small nucleolarRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381161,038,083 - 161,038,143EPDNEW


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000064968 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083034 ENTREZGENE
MGD MGI:3819537 ENTREZGENE
NCBI Gene 100217446 ENTREZGENE
PhenoGen Snord47 PhenoGen
RNAcentral URS000025413C RNACentral
  URS0000716DA8 RNACentral