Snord111 (small nucleolar RNA, C/D box 111) - Rat Genome Database

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Gene: Snord111 (small nucleolar RNA, C/D box 111) Mus musculus
Analyze
Symbol: Snord111
Name: small nucleolar RNA, C/D box 111
RGD ID: 2302595
MGI Page MGI
Description: ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); INTERACTS WITH thalidomide; valproic acid (ortholog); versicolorin A (ortholog)
Type: snorna
RefSeq Status: PROVISIONAL
Previously known as: MBII-; MBII-82
RGD Orthologs
Human
Rat
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398111,565,167 - 111,565,230 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8111,565,160 - 111,565,248 (-)EnsemblGRCm39 Ensembl
GRCm388110,838,535 - 110,838,598 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8110,838,528 - 110,838,616 (-)EnsemblGRCm38mm10GRCm38
MGSCv378113,362,435 - 113,362,498 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera8115,062,073 - 115,062,136 (-)NCBICelera
Cytogenetic Map8E1NCBI
cM Map857.75NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Snord111MouseCharcot-Marie-Tooth disease type 2  ISORGD:16023588554872ClinVar Annotator: match by term: Charcot-Marie-Tooth disease type 2ClinVarPMID:28492532


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Snord111Mousethalidomide increases expressionEXP 6480464Thalidomide results in increased expression of SNORD111 mRNACTDPMID:26217789
Snord111Mousevalproic acid decreases methylationISORGD:16023586480464Valproic Acid results in decreased methylation of SNORD111 geneCTDPMID:29154799
Snord111Mouseversicolorin A increases expressionISORGD:16023586480464versicolorin A results in increased expression of SNORD111 mRNACTDPMID:32106047


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Snord111Mousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Snord111Mousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Snord111Mousemolecular_function enablesND 2290270 MGIGO_REF:0000015


#
Reference Title
Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:11387227   PMID:11424213  



Snord111
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398111,565,167 - 111,565,230 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8111,565,160 - 111,565,248 (-)EnsemblGRCm39 Ensembl
GRCm388110,838,535 - 110,838,598 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8110,838,528 - 110,838,616 (-)EnsemblGRCm38mm10GRCm38
MGSCv378113,362,435 - 113,362,498 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera8115,062,073 - 115,062,136 (-)NCBICelera
Cytogenetic Map8E1NCBI
cM Map857.75NCBI
SNORD111
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381670,538,005 - 70,538,098 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1670,538,005 - 70,538,098 (+)EnsemblGRCh38hg38GRCh38
GRCh371670,571,908 - 70,572,001 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361669,129,409 - 69,129,502 (+)NCBINCBI36Build 36hg18NCBI36
Celera1654,956,138 - 54,956,231 (-)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1656,402,979 - 56,403,072 (+)NCBIHuRef
CHM1_11671,979,243 - 71,979,336 (+)NCBICHM1_1
T2T-CHM13v2.01676,349,194 - 76,349,287 (+)NCBIT2T-CHM13v2.0
Snord111
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81955,721,859 - 55,721,947 (-)NCBIGRCr8
mRatBN7.21938,812,486 - 38,812,574 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1938,812,486 - 38,812,574 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1943,399,759 - 43,399,847 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map19q12NCBI
LOC119872073
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha576,464,420 - 76,464,504 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0576,939,539 - 76,939,623 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1576,761,482 - 76,761,566 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0576,584,557 - 76,584,641 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0577,077,043 - 77,077,127 (+)NCBIUU_Cfam_GSD_1.0

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Variants in Snord111
7 total Variants

Predicted Target Of
Summary Value
Count of predictions:140
Count of miRNA genes:129
Interacting mature miRNAs:137
Transcripts:ENSMUST00000116746
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 37 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300560Tgl1_mtriglyceride level 1 (mouse)Not determined8102486208111650036Mouse
4141435Fbtq3_mfemoral bone trait QTL 3 (mouse)Not determined8100965309130127694Mouse
35673316Ari3_mantibody response to influenza 3, day 15, IgM (mouse)8109426632113826632Mouse
12904960Gmmq6_mgastrocnemius muscle mass QTL 6 (mouse)8111481497130127694Mouse
11252141Fdr2_mfat response to dietary restriction 2 (mouse)898390634130127694Mouse
1302105Im1_mImmunoregulatory 1 (mouse)Not determined899828531130127694Mouse
1301080Sluc9_msusceptibility to lung cancer 9 (mouse)Not determined899828531130127694Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined835109930115563747Mouse
36049782Arc2_mantibody response to CHIKV 2, day 7, IgM (mouse)8109426632113826632Mouse
36049783Arc3_mantibody response to CHIKV 3, day 7, FRNT50 (mouse)8109426632113826632Mouse

1 to 10 of 37 rows






Ensembl Acc Id: ENSMUST00000116746
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8111,565,160 - 111,565,248 (-)Ensembl
GRCm38.p6 Ensembl8110,838,528 - 110,838,616 (-)Ensembl
RefSeq Acc Id: NR_028559
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398111,565,167 - 111,565,230 (-)NCBI
GRCm388110,838,535 - 110,838,598 (-)ENTREZGENE
MGSCv378113,362,435 - 113,362,498 (-)RGD
Celera8115,062,073 - 115,062,136 (-)RGD
cM Map8 ENTREZGENE
Sequence:


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000080396 Ensembl
MGD MGI:3819518 ENTREZGENE
NCBI Gene 100217465 ENTREZGENE
PhenoGen Snord111 PhenoGen
RNAcentral URS000000E482 RNACentral
  URS000068BC5D RNACentral