Arc3_m QTL Report (Mus musculus) - Rat Genome Database

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QTL: Arc3_m (antibody response to CHIKV 3, day 7, FRNT50 (mouse)) Mus musculus

Symbol: Arc3_m
Name: antibody response to CHIKV 3, day 7, FRNT50 (mouse)
RGD ID: 36049783
LOD Score: Not Available
P Value: Not Available
Variance: Not Available
Position
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm398109,426,632 - 113,826,632MOUSEQTLGRCm39
GRCm388108,700,000 - 113,100,000MOUSEQTLGRCm38
cM Map8syntenicMOUSEQTL
Cross Type: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



References

References - curated
# Reference Title Reference Citation
1. Mouse Genome Database (MGD) Mouse Genome Database (MGD)
Additional References at PubMed
PMID:32348764  


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1321908Chst4carbohydrate sulfotransferase 48110755776110766033Mouse
1317477Pkd1l3polycystic kidney disease 1 like 38110340828110399305Mouse
1313868Il34interleukin 348111467809111532579Mouse
10728Hphaptoglobin8110301760110305804Mouse
1315378Znrf1zinc and ring finger 18112262652112352352Mouse
68498Dhodhdihydroorotate dehydrogenase8110319876110335330Mouse
11391Tattyrosine aminotransferase8110712710110726436Mouse
1316247Zfp612zinc finger protein 6128110806331110819385Mouse
737122Bcar1breast cancer anti-estrogen resistance 18112437106112470481Mouse
1315935Fcskfucose kinase8111609088111629120Mouse
732993Gabarapl2GABA type A receptor associated protein like 28112667335112679547Mouse
1318773Fa2hfatty acid 2-hydroxylase8112071770112120453Mouse
1320162Terf2iptelomeric repeat binding factor 2, interacting protein8112737991112747160Mouse
1319716Cmtr2cap methyltransferase 28110941977110951121Mouse
1320386Exosc6exosome component 68111782971111784296Mouse
1557749Zfp1zinc finger protein 18112366606112397740Mouse
1552967Calb2calbindin 28110869158110894844Mouse
1332574Zfp821zinc finger protein 8218110421884110451564Mouse
1551601Ap1g1adaptor protein complex AP-1, gamma 1 subunit8110505215110590842Mouse
1551306Cfdp1craniofacial development protein 18112493314112580969Mouse
1551072Ctrb1chymotrypsinogen B18112413142112417642Mouse
1550396Kars1lysyl-tRNA synthetase 18112720071112737986Mouse
1550506Wdr59WD repeat domain 598112175413112248760Mouse
1552589Txnl4bthioredoxin-like 4B8110292524110300683Mouse
1610967D030068K23RikRIKEN cDNA D030068K23 gene8109801854109980271Mouse
16117318030455M16RikRIKEN cDNA 8030455M16 gene8110774064110783808Mouse
1613236Gm1943predicted gene 19438110066419110067540Mouse
1321516Cog4component of oligomeric golgi complex 48111573232111608866Mouse
1317690Ldhdlactate dehydrogenase D8112352250112356968Mouse
1616409Clec18aC-type lectin domain family 18, member A8111796128111819056Mouse
1613831Gm6793predicted gene 67938112740065112741668Mouse
1318003Pdprpyruvate dehydrogenase phosphatase regulatory subunit8111821232111866402Mouse
16108181700064F23RikRIKEN cDNA 1700064F23 gene8110733157110735247Mouse
1557219Chst5carbohydrate sulfotransferase 58112615767112636831Mouse
1552593Marveld3MARVEL (membrane-associating) domain containing 38110674541110688837Mouse
1620043Tmem170transmembrane protein 1708112589670112603378Mouse
737509Glg1golgi apparatus protein 18111879916111985842Mouse
1551351St3gal2ST3 beta-galactoside alpha-2,3-sialyltransferase 28111646520111699132Mouse
1320790Adat1adenosine deaminase, tRNA-specific 18112685552112718938Mouse
1616036Gm10280predicted gene 102808113793894113819966Mouse
1551843Sf3b3splicing factor 3b, subunit 38111537123111573578Mouse
1550254Ddx19aDEAD box helicase 19a8111701623111724456Mouse
1550818Mlklmixed lineage kinase domain-like8112037879112065081Mouse
16183274922502B01RikRIKEN cDNA 4922502B01 gene8109871871109976377Mouse
732904Pmfbp1polyamine modulated factor 1 binding protein 18110104447110269274Mouse
1314606Tmem231transmembrane protein 2318112638639112660445Mouse
1618142Rfwd3ring finger and WD repeat domain 38111997576112026854Mouse
1312501Aars1alanyl-tRNA synthetase 18111759781111784237Mouse
1557225Ddx19bDEAD box helicase 19b8111729818111758383Mouse
1551146Vac14Vac14 homolog (S. cerevisiae)8111345161111447030Mouse
1321197Dhx38DEAH-box helicase 388110274631110292493Mouse
1317201Ist1increased sodium tolerance 1 homolog (yeast)8110397953110419929Mouse
1621566Atxn1lataxin 1-like8110453083110464426Mouse
1320228Mtss2MTSS I-BAR domain containing 28111447718111468032Mouse
1558533HydinHYDIN, axonemal central pair apparatus protein8110993600111336885Mouse
1556866Phlpp2PH domain and leucine rich repeat protein phosphatase 28110595149110671303Mouse
1319400Zfhx3zinc finger homeobox 38109005975109688272Mouse
1315090Cntnap4contactin associated protein-like 48113296523113609339Mouse
16226559430091E24RikRIKEN cDNA 9430091E24 gene8111854076111872130Mouse
2295270Gm8970predicted gene 89708110477669110478584Mouse
2294050Gm6014predicted gene 60148112036315112036799Mouse
2302595Snord111small nucleolar RNA, C/D box 1118111565167111565230Mouse
2302621Snord71small nucleolar RNA, C/D box 718110565944110566007Mouse
2299757Gm3635predicted gene 36358112962979112963696Mouse
2299771Gm9564predicted gene 95648112751500112758987Mouse
4888655Mir3108microRNA 31088109663492109663570Mouse
10003659Gm39247predicted gene, 392478110309842110310927Mouse
5134321Mir3473dmicroRNA 3473d8111743082111743162Mouse
5142628Gm18925predicted gene, 189258109765932109767070Mouse
5685998Gm17344predicted gene, 173448110563999110595073Mouse
7179174Gm21283predicted gene, 212838111221998111228988Mouse
7488490n-TGgcc10nuclear encoded tRNA glycine 10 (anticodon GCC)8111357878111357948Mouse
7488880n-TGgcc2nuclear encoded tRNA glycine 2 (anticodon GCC)8111789193111789263Mouse
7488755n-TGgcc11nuclear encoded tRNA glycine 11 (anticodon GCC)8111357185111357255Mouse
9637654Gm36531predicted gene, 365318112640738112655693Mouse
9635072Gm15894predicted gene 158948111482244111485604Mouse
9621281Gm35543predicted gene, 355438110840405110848595Mouse
9611343Gm26832predicted gene, 268328110988778110993654Mouse
9595588Tle7TLE family member 78110827964110838646Mouse
9646356Gm35676predicted gene, 356768111163460111171023Mouse
9660651Mir7076microRNA 70768112416233112416306Mouse
9664775Gm26994predicted gene, 269948113281249113296207Mouse
9644795Gm36671predicted gene, 366718112788204112790316Mouse
9643381Gm35145predicted gene, 351458110175274110190915Mouse
10021067Gm39252predicted gene, 392528112475129112487827Mouse
10014859Gm39250predicted gene, 392508111486994111507851Mouse
10015966Gm39249predicted gene, 392498110981674110987176Mouse
10033320Gm39246predicted gene, 392468110194492110220613Mouse
10025164Gm39254predicted gene, 392548113198731113202138Mouse
10026910Gm38523predicted gene, 385238111784878111791791Mouse
10028714Gm39253predicted gene, 392538113020480113023787Mouse
10029935Gm39251predicted gene, 392518111668932111675672Mouse
12793102Gm46052predicted gene, 460528111662819111665939Mouse
15022489Gm51550predicted gene, 515508110477648110481106Mouse
14997241Gm26132predicted gene, 261328111649748111649895Mouse
15019149Gm51589predicted gene, 515898112468278112475531Mouse
15019271Gm51551predicted gene, 515518111717153111723088Mouse
14998449Gm25321predicted gene, 253218110567220110567321Mouse
15000420Gm23627predicted gene, 236278111147993111148099Mouse
15002660Gm45904predicted gene 459048113613343113648774Mouse
15002723Gm45795predicted gene 457958110700582110713207Mouse
15003034Gm22827predicted gene, 228278112789137112789243Mouse
15554700Gm22193predicted gene, 221938111569015111569090Mouse
14999112Gm24793predicted gene, 247938112145364112145495Mouse
39130288LOC114827903VISTA enhancer mm16868112442837112445014Mouse
39129476Gm53453predicted gene, 534538110436042110444394Mouse
39129554Gm53455predicted gene, 534558111985800111986908Mouse
39130450Gm53452predicted gene, 534528110086187110095546Mouse
39129267Gm53456predicted gene, 534568112984326113025001Mouse
39130210Gm53454predicted gene, 534548111402218111403476Mouse
163685118LOC128926003CapStarr-seq enhancer MGSCv37_chr8:114500469-1145006528112703201112703384Mouse
163701174LOC128926000CapStarr-seq enhancer MGSCv37_chr8:114116137-1141163388112318869112319070Mouse
163680332LOC128925990STARR-positive B cell enhancer ABC_E5658110292386110292687Mouse
163682911LOC128925996STARR-seq mESC enhancer starr_226858111572275111574444Mouse
163694443LOC128925998CapStarr-seq enhancer MGSCv37_chr8:114079308-1140794178112282040112282149Mouse
163690287LOC128925995CapStarr-seq enhancer MGSCv37_chr8:112741810-1127419198110944246110944651Mouse
163705052LOC128925987CapStarr-seq enhancer MGSCv37_chr8:111410618-1114108018109613350109613533Mouse
163703195LOC128926001CapStarr-seq enhancer MGSCv37_chr8:114119771-1141199938112322503112322725Mouse
163682389LOC128925999CapStarr-seq enhancer MGSCv37_chr8:114087696-1140879138112290428112290645Mouse
163660573LOC128926002CapStarr-seq enhancer MGSCv37_chr8:114464460-1144645698112667192112667301Mouse
163664089LOC128925988CapStarr-seq enhancer MGSCv37_chr8:111411041-1114114058109613773109614137Mouse
163645141LOC128925994CapStarr-seq enhancer MGSCv37_chr8:112302310-1123024938110505042110505353Mouse
163651167LOC128925991CapStarr-seq enhancer MGSCv37_chr8:112132543-1121327268110335275110335458Mouse
163665690LOC128925989CapStarr-seq enhancer MGSCv37_chr8:112089480-1120895898110292212110292321Mouse
163647114LOC128925993CapStarr-seq enhancer MGSCv37_chr8:112261750-1122618598110464482110464591Mouse
163667329LOC128925997STARR-seq mESC enhancer starr_226938112026071112027723Mouse
163712531LOC128925992STARR-positive B cell enhancer ABC_E38058110419810110420111Mouse
401703564LOC131375081STARR-seq mESC enhancer starr_227418113209590113211199Mouse
401703371LOC131375047STARR-seq mESC enhancer starr_226378109446712109450580Mouse
401701900LOC131375055STARR-seq mESC enhancer starr_226608110485503110487193Mouse
401702101LOC131375084STARR-seq mESC enhancer starr_227458113424281113426215Mouse
401712958LOC131375054STARR-seq mESC enhancer starr_226598110480829110482213Mouse
401713926LOC131375056STARR-seq mESC enhancer starr_226618110508146110510750Mouse
401714115LOC131375085STARR-seq mESC enhancer starr_227468113452154113455701Mouse
401715621LOC131375088STARR-seq mESC enhancer starr_227498113558800113560254Mouse
401715520LOC131375065STARR-seq mESC enhancer starr_226838111534236111537239Mouse
401714234LOC131375051STARR-seq mESC enhancer starr_226518110162323110164641Mouse
401715554LOC131375063STARR-seq mESC enhancer starr_226808111330929111333420Mouse
401715761LOC131375062STARR-seq mESC enhancer starr_226778111245596111250884Mouse
401713122LOC131375048STARR-seq mESC enhancer starr_226468109553477109555073Mouse
401714649LOC131375068STARR-seq mESC enhancer starr_226958112157255112159146Mouse
401710716LOC131375076STARR-seq mESC enhancer starr_227258112618001112619595Mouse
401710179LOC131375073STARR-seq mESC enhancer starr_227148112484202112486384Mouse
401711902LOC131375053STARR-seq mESC enhancer starr_226588110471857110473510Mouse
401711149LOC131375087STARR-seq mESC enhancer starr_227488113523502113525095Mouse
401711531LOC131375074STARR-seq mESC enhancer starr_227158112488314112493651Mouse
401710606LOC131375067STARR-seq mESC enhancer starr_226928111920140111921256Mouse
401712752LOC131375060STARR-seq mESC enhancer starr_226748110974137110976076Mouse
401711980LOC131375090STARR-seq mESC enhancer starr_227518113692158113693455Mouse
401710459LOC131375052STARR-seq mESC enhancer starr_226558110204555110206280Mouse
401711032LOC131375075STARR-seq mESC enhancer starr_227248112614477112615507Mouse
401709696LOC131375061STARR-seq mESC enhancer starr_226758111141098111142770Mouse
401709703LOC131375066STARR-seq mESC enhancer starr_226878111723847111728373Mouse
401707415LOC131375077STARR-seq mESC enhancer starr_227298112669485112675414Mouse
401706672LOC131375078STARR-seq mESC enhancer starr_227368112817323112821318Mouse
401707263LOC131375058STARR-seq mESC enhancer starr_226648110711466110713095Mouse
401709028LOC131375079STARR-seq mESC enhancer starr_227378113025487113027207Mouse
401707351LOC131375059STARR-seq mESC enhancer starr_226668110735159110736582Mouse
401707728LOC131375082STARR-seq mESC enhancer starr_227438113244441113245832Mouse
401708887LOC131375050STARR-seq mESC enhancer starr_226508109902153109903495Mouse
401707377LOC131375072STARR-seq mESC enhancer starr_227088112383642112384329Mouse
401708156LOC131375064STARR-seq mESC enhancer starr_226818111486957111488235Mouse
401706279LOC131375070STARR-seq mESC enhancer starr_227058112337943112342583Mouse
401705325LOC131375089STARR-seq mESC enhancer starr_227508113660165113660861Mouse
401705168LOC131375071STARR-seq mESC enhancer starr_227078112374462112378805Mouse
401705550LOC131375069STARR-seq mESC enhancer starr_226988112266926112268669Mouse
401705555LOC131375080STARR-seq mESC enhancer starr_227408113073676113075377Mouse
401706020LOC131375049STARR-seq mESC enhancer starr_226498109776910109779649Mouse
401706214LOC131375091STARR-seq mESC enhancer starr_227528113761331113763233Mouse
401716943LOC131375083STARR-seq mESC enhancer starr_227448113420958113423723Mouse
401716424LOC131375086STARR-seq mESC enhancer starr_227478113512623113513566Mouse
401717220LOC131375057STARR-seq mESC enhancer starr_226628110616557110619623Mouse
401833254LOC132412908STARR-positive B cell enhancer ABC_E113988111586481111586781Mouse
401833609LOC132412915STARR-positive B cell enhancer ABC_E1128112248700112249001Mouse
401832932LOC132412910STARR-positive B cell enhancer ABC_E82648111655718111656019Mouse
401832695LOC132412922STARR-positive B cell enhancer ABC_E66868112580891112581192Mouse
401833925LOC132412918STARR-positive B cell enhancer ABC_E8858112370473112370774Mouse
401837283LOC132412909STARR-positive B cell enhancer ABC_E97438111646186111646486Mouse
401837284LOC132412905STARR-positive B cell enhancer ABC_E105228110684522110684822Mouse
401834864LOC132412923STARR-positive B cell enhancer ABC_E50438112603302112603603Mouse
401835940LOC132412921STARR-positive B cell enhancer ABC_E66858112547837112548138Mouse
401835809LOC132412907STARR-positive B cell enhancer ABC_E50408111345030111345331Mouse
401836156LOC132412917STARR-positive B cell enhancer ABC_E93238112369877112370177Mouse
401835143LOC132412925STARR-positive B cell enhancer ABC_E13768112718943112719244Mouse
401836713LOC132412904STARR-positive B cell enhancer ABC_E66838110683744110684045Mouse
401834985LOC132412916STARR-positive B cell enhancer ABC_E50418112288780112289081Mouse
401838792LOC132412924STARR-positive B cell enhancer ABC_E66878112716567112716868Mouse
401837920LOC132412911STARR-positive B cell enhancer ABC_E17708111696905111697206Mouse
401839012LOC132412919STARR-positive B cell enhancer ABC_E50428112371019112371320Mouse
401840424LOC132412914STARR-positive B cell enhancer ABC_E66848112069918112070219Mouse
401841055LOC132412903STARR-positive B cell enhancer ABC_E66828110643744110644045Mouse
401841630LOC132412906STARR-positive B cell enhancer ABC_E82638110688726110689027Mouse
401840546LOC132412913STARR-positive B cell enhancer ABC_E7088111985678111985979Mouse
401840547LOC132412912STARR-positive B cell enhancer ABC_E5668111760266111760567Mouse
401842114LOC132412920STARR-positive B cell enhancer ABC_E105238112404726112405026Mouse

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832506572117965439Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined835109930115563747Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837867154110326632Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871740461124622354Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71740461124622354Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)874126628126826739Mouse
1558890Lith18_mlithogenic gene 18 (mouse)Not determined876402145110402251Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined876411976110412125Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined876411976110412125Mouse
1301874Hdlq16_mHDL QTL 16 (mouse)Not determined876411976110412125Mouse
1301099Cbm2_mcerebellum weight 2 (mouse)Not determined879245241113245331Mouse
1301581Char2_mP. chabaudi malaria resistance QTL 2 (mouse)Not determined879808806113809031Mouse
10755530Wbc2_mwhite blood cell count 2 (mouse)881819296115819296Mouse
10755519Wbc1_mwhite blood cell count 1 (mouse)882345783116345783Mouse
1301766Desp1_mdespair 1 (mouse)Not determined885486208119486373Mouse
1302049Heal1_mwound healing/regeneration 1 (mouse)Not determined886443553120443701Mouse
1301253Skmw2_mskeletal muscle weight 2 (mouse)Not determined886443553120443701Mouse
10045619Heal14_mwound healing/regeneration 14 (mouse)Not determined886443553120443701Mouse
27226796Scvln16_msacral vertebrae length 2, 16 week (mouse)889726628130027694Mouse
1357494Obsty2_mobesity 2 (mouse)Not determined896245241129745061Mouse
12880431Fgf23lq2_mFGF23 serum level QTL 2 (mouse)897626632130127694Mouse
11252141Fdr2_mfat response to dietary restriction 2 (mouse)898390634130127694Mouse
1301481Lith11_mlithogenic gene 11 (mouse)Not determined898563635130127694Mouse
1302105Im1_mImmunoregulatory 1 (mouse)Not determined899828531130127694Mouse
1301080Sluc9_msusceptibility to lung cancer 9 (mouse)Not determined899828531130127694Mouse
4141435Fbtq3_mfemoral bone trait QTL 3 (mouse)Not determined8100965309130127694Mouse
1300560Tgl1_mtriglyceride level 1 (mouse)Not determined8102486208111650036Mouse
1300681Pgia22_mproteoglycan induced arthritis 22 (mouse)Not determined8102486208116025457Mouse
1301316Dntcs1_mdental caries susceptibility 1 (mouse)Not determined8103443553127781786Mouse
11532691Sluc38_msusceptibility to lung cancer 38 (mouse)8105033977130127694Mouse
11532692Sluc38a_msusceptibility to lung cancer 38a (mouse)8105033977130127694Mouse
14746994Manh65_mmandible shape 65 (mouse)8106489629130127694Mouse
36049780Ars12_mantibody response to SARS-CoV 12, 4 days post-rechallenge, IgM (mouse)8109426632113826632Mouse
36049781Arc1_mantibody response to CHIKV 1, day 7, IgG (mouse)8109426632113826632Mouse
36049782Arc2_mantibody response to CHIKV 2, day 7, IgM (mouse)8109426632113826632Mouse
36049783Arc3_mantibody response to CHIKV 3, day 7, FRNT50 (mouse)8109426632113826632Mouse
35673316Ari3_mantibody response to influenza 3, day 15, IgM (mouse)8109426632113826632Mouse
10412273Fcd1_mfunctional capillary density 1 (mouse)Not determined8110415083130127694Mouse
10412274Leci1_mleukocyte endothelial cell interactions 1 (mouse)Not determined8110415083130127694Mouse
11079194Tpnr6_mthermal pain response 6 (mouse)8111166632114956740Mouse
12904938Edlmmq7_mextensor digitorum longus muscle mass QTL 7 (mouse)8111481497130127694Mouse
12904960Gmmq6_mgastrocnemius muscle mass QTL 6 (mouse)8111481497130127694Mouse


Additional Information

Database Acc Id Source(s)
MGD MGI:6436539 MouseQtl