TRN-GTT13-1 (tRNA-Asn (GTT) 13-1) - Rat Genome Database

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Gene: TRN-GTT13-1 (tRNA-Asn (GTT) 13-1) Homo sapiens
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Symbol: TRN-GTT13-1
Name: tRNA-Asn (GTT) 13-1
RGD ID: 2300794
HGNC Page HGNC:34746
Description:
Type: trna
Previously known as: transfer RNA-Asn (GTT) 13-1; TRNAN18
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38116,875,463 - 16,875,536 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37117,201,958 - 17,202,031 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map1p36.13NCBI
HuRef115,443,015 - 15,443,088 (+)NCBIHuRef
CHM1_1117,310,259 - 17,310,332 (+)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:18984615  


Genomics


Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 1p36.13(chr1:16724714-16905292)x3 copy number gain See cases [RCV000136471] Chr1:16724714..16905292 [GRCh38]
Chr1:17051209..17231787 [GRCh37]
Chr1:16923796..17104374 [NCBI36]
Chr1:1p36.13		 benign
GRCh38/hg38 1p36.13(chr1:16621632-16905322)x1 copy number loss See cases [RCV000135910] Chr1:16621632..16905322 [GRCh38]
Chr1:16948127..17231817 [GRCh37]
Chr1:16820714..17104404 [NCBI36]
Chr1:1p36.13		 benign
GRCh38/hg38 1p36.13(chr1:16615158-16905322)x3 copy number gain See cases [RCV000135921] Chr1:16615158..16905322 [GRCh38]
Chr1:16941653..17231817 [GRCh37]
Chr1:16814240..17104404 [NCBI36]
Chr1:1p36.13		 benign
GRCh38/hg38 1p36.21-36.13(chr1:15681812-19662339)x1 copy number loss See cases [RCV000138070] Chr1:15681812..19662339 [GRCh38]
Chr1:16008307..19988832 [GRCh37]
Chr1:15880894..19861419 [NCBI36]
Chr1:1p36.21-36.13		 pathogenic
GRCh38/hg38 1p36.31-36.13(chr1:5363826-18360302)x1 copy number loss See cases [RCV000142771] Chr1:5363826..18360302 [GRCh38]
Chr1:5423886..18686796 [GRCh37]
Chr1:5323746..18559383 [NCBI36]
Chr1:1p36.31-36.13		 pathogenic
GRCh38/hg38 1p36.31-36.13(chr1:6853513-17326813)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051795]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051795]|See cases [RCV000051795] Chr1:6853513..17326813 [GRCh38]
Chr1:6913573..17685411 [GRCh37]
Chr1:6836160..17557998 [NCBI36]
Chr1:1p36.31-36.13		 pathogenic
GRCh38/hg38 1p36.21-36.12(chr1:13110797-20670207)x3 copy number gain See cases [RCV000051797] Chr1:13110797..20670207 [GRCh38]
Chr1:13178269..20996700 [GRCh37]
Chr1:13100856..20869287 [NCBI36]
Chr1:1p36.21-36.12		 pathogenic
GRCh38/hg38 1p36.21-36.13(chr1:13619979-18466172)x3 copy number gain See cases [RCV000051799] Chr1:13619979..18466172 [GRCh38]
Chr1:13946474..18792666 [GRCh37]
Chr1:13819061..18665253 [NCBI36]
Chr1:1p36.21-36.13		 pathogenic
GRCh38/hg38 1p36.21-36.12(chr1:15385267-20980349)x1 copy number loss See cases [RCV000051146] Chr1:15385267..20980349 [GRCh38]
Chr1:15711763..21306842 [GRCh37]
Chr1:15584350..21179429 [NCBI36]
Chr1:1p36.21-36.12		 pathogenic
GRCh38/hg38 1p36.32-36.13(chr1:3006193-17688934)x1 copy number loss See cases [RCV000053714] Chr1:3006193..17688934 [GRCh38]
Chr1:2922757..18015429 [GRCh37]
Chr1:2912617..17888016 [NCBI36]
Chr1:1p36.32-36.13		 pathogenic
GRCh38/hg38 1p36.22-36.12(chr1:10556797-22557907)x1 copy number loss See cases [RCV000053760] Chr1:10556797..22557907 [GRCh38]
Chr1:10616854..22884400 [GRCh37]
Chr1:10539441..22756987 [NCBI36]
Chr1:1p36.22-36.12		 pathogenic
GRCh38/hg38 1p36.21-36.13(chr1:15173497-18242678)x1 copy number loss See cases [RCV000053769] Chr1:15173497..18242678 [GRCh38]
Chr1:15499993..18569172 [GRCh37]
Chr1:15372580..18441759 [NCBI36]
Chr1:1p36.21-36.13		 pathogenic
GRCh38/hg38 1p36.21-36.13(chr1:15173497-17019576)x1 copy number loss See cases [RCV000053771] Chr1:15173497..17019576 [GRCh38]
Chr1:15499993..17346071 [GRCh37]
Chr1:15372580..17218658 [NCBI36]
Chr1:1p36.21-36.13		 pathogenic
GRCh38/hg38 1p36.33-35.1(chr1:99125-34026935)x3 copy number gain Trisomy 12p [RCV003447845] Chr1:99125..34026935 [GRCh38]
Chr1:1p36.33-35.1		 pathogenic

QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide BX284668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HG983649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
COSMIC TRN-GTT13-1 COSMIC
GTEx TRN-GTT13-1 GTEx
HGNC ID HGNC:34746 ENTREZGENE
Human Proteome Map TRN-GTT13-1 Human Proteome Map
NCBI Gene 100189183 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-11-29 TRN-GTT13-1  tRNA-Asn (GTT) 13-1    transfer RNA-Asn (GTT) 13-1  Symbol and/or name change 5135510 APPROVED
2014-06-24 TRN-GTT13-1  transfer RNA-Asn (GTT) 13-1  TRNAN18  transfer RNA asparagine 18 (anticodon GUU)  Symbol and/or name change 5135510 APPROVED