Fbl-ps2 (fibrillarin, pseudogene 2) - Rat Genome Database

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Gene: Fbl-ps2 (fibrillarin, pseudogene 2) Mus musculus
Analyze
Symbol: Fbl-ps2
Name: fibrillarin, pseudogene 2
RGD ID: 2295766
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG545184; Gm5812; predicted gene 5812
Related Functional Gene: Fbl  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39176,171,368 - 6,172,499 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl176,171,483 - 6,172,439 (-)EnsemblGRCm39 Ensembl
GRCm38176,121,093 - 6,122,224 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl176,121,208 - 6,122,164 (-)EnsemblGRCm38mm10GRCm38
MGSCv37176,120,994 - 6,122,325 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36176,077,576 - 6,078,707 (-)NCBIMGSCv36mm8
Celera176,659,123 - 6,660,448 (-)NCBICelera
Cytogenetic Map17A1NCBI
cM Map173.73NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Fbl-ps2
56 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:227
Count of miRNA genes:205
Interacting mature miRNAs:217
Transcripts:ENSMUST00000061073
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined485475245670266Mouse
12910982Pifs2_mpeptide-induced fatal syndrome 2 (mouse)17126189355Mouse
12910528Nrq1_mnoise-induced hearing loss resistant QTL 1 (mouse)17129198453Mouse
1357680Idd23_minsulin dependent diabetes susceptibility 23 (mouse)Not determined17397489026401133Mouse
1302196Myaa1_mmodifier of Yaa 1 (mouse)Not determined17120975022Mouse
1302100Circp2_mcircadian photosensitivity 2 (mouse)Not determined17129198453Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17397489048866091Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17485475247885665Mouse
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17334817537348299Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17485475246469702Mouse
1300613Pcyts4_mplasmacytoma susceptibility 4 (mouse)Not determined17127081639Mouse
1357452Vtbt18_mvertebral trabecular bone trait 18 (mouse)Not determined17120975022Mouse
1357902Obq19_mobesity QTL 19 (mouse)Not determined17125662076Mouse
1357743Lith3_mlithogenic gene 3 (mouse)Not determined17126194456Mouse
12910527Nrq1a_mnoise-induced hearing loss resistant QTL 1a (mouse)17129198453Mouse
1301615Cfld3_mcystic fibrosis lung disease 3 (mouse)Not determined17127081639Mouse
1301327Lmr7_mleishmaniasis resistance 7 (mouse)Not determined17485475227715939Mouse
13524851Asrq8_macoustic startle response 8 (mouse)17131030170Mouse

Markers in Region
RH125326  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38176,121,325 - 6,121,501UniSTSGRCm38
MGSCv37176,121,325 - 6,121,501UniSTSGRCm37
Celera370,839,729 - 70,839,905UniSTS
Celera176,659,448 - 6,659,624UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map17A1UniSTS
cM Map173.2UniSTS
MARC_26184-26185:1030717529:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv37176,121,403 - 6,121,586UniSTSGRCm37
Celera176,659,526 - 6,659,709UniSTS
Celera370,839,807 - 70,839,990UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_005403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC154650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000061073
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl176,171,483 - 6,172,439 (-)Ensembl
GRCm38.p6 Ensembl176,121,208 - 6,122,164 (-)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000051639 Ensembl, ENTREZGENE
MGD MGI:3644887 ENTREZGENE
NCBI Gene 545184 ENTREZGENE
PhenoGen Fbl-ps2 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-10-22 Fbl-ps2  fibrillarin, pseudogene 2  Gm5812  predicted gene 5812  Symbol and/or name change 5135510 APPROVED