Gm5837 (predicted gene 5837) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Gm5837 (predicted gene 5837) Mus musculus
Analyze
Symbol: Gm5837
Name: predicted gene 5837
RGD ID: 2295575
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG545399
Related Functional Gene: Ruvbl1  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391139,855,788 - 139,857,421 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1139,855,978 - 139,857,346 (-)EnsemblGRCm39 Ensembl
GRCm381139,928,050 - 139,929,683 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1139,928,240 - 139,929,608 (-)EnsemblGRCm38mm10GRCm38
MGSCv371141,824,627 - 141,826,260 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361141,744,466 - 141,746,093 (+)NCBIMGSCv36mm8
Celera1142,568,383 - 142,570,015 (-)NCBICelera
Cytogenetic Map1FNCBI
cM Map161.62NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




.

.
Variants in Gm5837
63 total Variants

1 to 10 of 50 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301523Ccrs1_mcorpus callosum hemisphere surface size 1 (mouse)Not determined1139602037173602216Mouse
1302161Exq2_mexploratory and excitability QTL 2 (mouse)Not determined1118099720152099816Mouse
27226779Tibl1_mtibia length 1, 5 week (mouse)195527725162027569Mouse
14746980Manh50_mmandible shape 50 (mouse)1134131564168131564Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
1301149Lrnx12_mlearning-contextual 12 (mouse)Not determined1112008822168186402Mouse
27226767Tibl10_mtibia length 10, 10 week (mouse)1121727729164827569Mouse
12790994Aaaq1_maortic arch angle QTL 1 (mouse)1109495943143495943Mouse

1 to 10 of 50 rows





RefSeq Transcripts NG_005429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC115748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000191844
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1139,855,978 - 139,857,346 (-)Ensembl
GRCm38.p6 Ensembl1139,928,240 - 139,929,608 (-)Ensembl


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000104496 Ensembl, ENTREZGENE
MGD MGI:3648028 ENTREZGENE
NCBI Gene 545399 ENTREZGENE
PhenoGen Gm5837 PhenoGen