Rpl30-ps9 (ribosomal protein L30, pseudogene 9) - Rat Genome Database

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Gene: Rpl30-ps9 (ribosomal protein L30, pseudogene 9) Mus musculus
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Symbol: Rpl30-ps9
Name: ribosomal protein L30, pseudogene 9
RGD ID: 2295489
MGI Page MGI
Description: INTERACTS WITH 2,3',4,4',5-Pentachlorobiphenyl; 2,3,7,8-tetrachlorodibenzodioxine; perfluorohexanesulfonic acid
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG622202; ENSMUSG00000073014; Gm6295
Related Functional Gene: Rpl30  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X104,322,189 - 104,322,659 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX104,322,243 - 104,322,587 (-)EnsemblGRCm39 Ensembl
GRCm38X105,278,583 - 105,279,053 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX105,278,637 - 105,278,981 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X102,473,922 - 102,474,392 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X101,481,311 - 101,481,736 (+)NCBIMGSCv36mm8
CeleraX92,140,668 - 92,141,138 (-)NCBICelera
Cytogenetic MapXDNCBI
cM MapX46.88NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rpl30-ps9Mouse2,3',4,4',5-Pentachlorobiphenyl increases expressionEXP 64804642 more ...CTDPMID:31388691
Rpl30-ps9Mouse2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of RPL30-PS9 mRNACTDPMID:31961203
Rpl30-ps9Mouseperfluorohexanesulfonic acid decreases expressionEXP 6480464perfluorohexanesulfonic acid results in decreased expression of RPL30-PS9 mRNACTDPMID:37995155



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Variants in Rpl30-ps9
18 total Variants

Predicted Target Of
Summary Value
Count of predictions:64
Count of miRNA genes:32
Interacting mature miRNAs:33
Transcripts:ENSMUST00000122265, ENSMUST00000163337
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 10 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined47179121129764756Mouse
13208552Wght12_mweight 12 (mouse)X94043606149782996Mouse
4141803Lmr30_mleishmaniasis resistance 30 (mouse)Not determined85062606119062720Mouse
13208556Lgth14_mbody length 14 (mouse)X94043606149782996Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
11075102Modc2_mmodifier of Odc2 (mouse)X80189914114190059Mouse
1357500Mdmsc6_mmodifier of muscularity 6 (mouse)Not determinedX75306671109306758Mouse
1357823Spha3_msperm head anomaly 3 (mouse)Not determinedX102055848162758941Mouse
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
4141665Mhysq2_mmale hybrid sterility QTL 2 (mouse)Not determined71453852139203212Mouse

1 to 10 of 10 rows





RefSeq Transcripts NG_005377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL672248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000122265
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX104,322,243 - 104,322,587 (-)Ensembl
GRCm38.p6 EnsemblX105,278,637 - 105,278,981 (-)Ensembl


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000085791 Ensembl
MGD MGI:3648153 ENTREZGENE
NCBI Gene 622202 ENTREZGENE
PhenoGen Rpl30-ps9 PhenoGen


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-09-17 Rpl30-ps9  ribosomal protein L30, pseudogene 9  ENSMUSG00000073014  predicted gene, ENSMUSG00000073014  Symbol and/or name change 5135510 APPROVED