Rpsa-ps5 (ribosomal protein SA, pseudogene 5) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Rpsa-ps5 (ribosomal protein SA, pseudogene 5) Mus musculus
Analyze
Symbol: Rpsa-ps5
Name: ribosomal protein SA, pseudogene 5
RGD ID: 2295246
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: Gm12083
Related Functional Gene: Rpsa  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391128,906,655 - 28,907,672 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1128,906,724 - 28,907,608 (+)EnsemblGRCm39 Ensembl
GRCm381128,956,655 - 28,957,672 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1128,956,724 - 28,957,608 (+)EnsemblGRCm38mm10GRCm38
MGSCv371128,856,624 - 28,857,708 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361128,856,724 - 28,857,608 (+)NCBIMGSCv36mm8
MGSCv361128,960,039 - 28,960,923 (+)NCBIMGSCv36mm8
Cytogenetic Map11A3.3NCBI
cM Map1116.39NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


PMID:20003482  



.

.
Variants in Rpsa-ps5
19 total Variants

Predicted Target Of
Summary Value
Count of predictions:53
Count of miRNA genes:52
Interacting mature miRNAs:53
Transcripts:ENSMUST00000121462
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 58 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
1302171Pgia28_mproteoglycan induced arthritis 28 (mouse)Not determined11890609742906218Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
12910804Pwbwq16_mpost-weaning body weight QTL 16 (mouse)112719805750636094Mouse
12910806Pwbwq15_mpost-weaning body weight QTL 15 (mouse)112719805750636094Mouse
12910801Pwbwq14_mpost-weaning body weight QTL 14 (mouse)112719805750636094Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse

1 to 10 of 58 rows





RefSeq Transcripts NG_005456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL954346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000121462
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1128,906,724 - 28,907,608 (+)Ensembl
GRCm38.p6 Ensembl1128,956,724 - 28,957,608 (+)Ensembl


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000081695 Ensembl, ENTREZGENE
MGD MGI:3650550 ENTREZGENE
NCBI Gene 382504 ENTREZGENE
PhenoGen Rpsa-ps5 PhenoGen


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Rpsa-ps5  ribosomal protein SA, pseudogene 5  Gm12083  predicted gene 12083  Symbol and/or name change 5135510 APPROVED