Gm13490 (predicted gene 13490) - Rat Genome Database

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Gene: Gm13490 (predicted gene 13490) Mus musculus
Analyze
Symbol: Gm13490
Name: predicted gene 13490
RGD ID: 2294769
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: PREDICTED
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39251,546,978 - 51,622,021 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl251,546,978 - 51,682,328 (-)EnsemblGRCm39 Ensembl
GRCm38251,656,966 - 51,732,009 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl251,656,966 - 51,732,009 (-)EnsemblGRCm38mm10GRCm38
MGSCv37251,532,107 - 51,587,523 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36251,498,596 - 51,554,012 (-)NCBIMGSCv36mm8
MGSCv36252,196,878 - 52,252,109 (-)NCBIMGSCv36mm8
Celera253,369,203 - 53,445,764 (-)NCBICelera
Cytogenetic Map2C1.1NCBI
cM Map229.96NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24316575  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:195
Count of miRNA genes:152
Interacting mature miRNAs:154
Transcripts:ENSMUST00000143870
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212953766556453Mouse
12904005Cfq2_mconditioned fear QTL 2 (mouse)22702264256396228Mouse
14746979Manh51_mmandible shape 51 (mouse)22896112962961129Mouse
1301402Ap2q_malcohol preference 2 QTL (mouse)Not determined24352061277520756Mouse
4142133Pbwg1.6_mpostnatal body weight growth 1.6 (mouse)Not determined3579732469797406Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
4142130Pgis2_mproteoglycan induced spondylitis 2 (mouse)Not determined22530805156971811Mouse
1301376Etohc1_methanol consumption 1 (mouse)Not determined22112972555129871Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
14746997Mancz2_mmandible centroid size 2 (mouse)22896112962961129Mouse
1300875Taste1_mtaste-saccharin preference 1 (mouse)Not determined25092317584923278Mouse
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
1300788Cia2_mcollagen induced arthritis QTL 2 (mouse)Not determined24352061277520756Mouse
1300671Cia4_mcollagen induced arthritis QTL 4 (mouse)Not determined24352061277520756Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1301411Pitm1_mprion incubation time 1 (mouse)Not determined24352061277520756Mouse
4141069Pbwg1.5_mpostnatal body weight growth 1.5 (mouse)Not determined4352061277520756Mouse
4141708Pbwg1.2_mpostnatal body weight growth 1.2 (mouse)Not determined2112972555129871Mouse
1558820Moo1_mmodifier of Odc1 (mouse)Not determined174826974682269934Mouse
1300645Alcp1_malcohol preference locus 1 (mouse)Not determined24522812867838868Mouse
4141186Pbwg1.8_mpostnatal body weight growth 1.8 (mouse)Not determined3579732469797406Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
11038703Ltpr1_mLeishmania tropica response 1 (mouse)23997166573971811Mouse
1300568Hdl1_mhigh density lipoprotein (HDL) level 1 (mouse)Not determined24826974682269934Mouse
26884438Sklq12_mskull length QTL 12, 16 week (mouse)22459001254890012Mouse
1559001Eae33_mexperimental allergic encephalomyelitis susceptibility 33 (mouse)Not determined23599167971609412Mouse
4142447Pbwg1.7_mpostnatal body weight growth 1.7 (mouse)Not determined3579732469797406Mouse
10449151Hdl8_mhigh density lipoprotein (HDL) level 8 (mouse)23812972567072607Mouse
1301747Eae21_mexperimental allergic encephalomyelitis 21 (mouse)Not determined24826974682269934Mouse
1301235Alcw4_malcohol withdrawal 4 (mouse)Not determined24826974682269934Mouse
10449150Pvldlc1_mplasma VLDL-cholesterol 1 (mouse)23812972567072607Mouse
10755526Lymph1_mlymphocyte differential 1 (mouse)25081931484819314Mouse
13463470Tubisq1_mtubulointerstitial injury severity, QTL 1 (mouse)22368914557689269Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
10449145Lanq1_mlanosterol level QTL 1 (mouse)23812972567072607Mouse
1301109Dntcs2_mdental caries susceptibility 2 (mouse)Not determined240885493114910165Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
10755532Lymph5_mlymphocyte differential 5 (mouse)24419901778199017Mouse
11532740Pbwg1.10_mpostnatal body weight growth 1.10 (mouse)24813241282132495Mouse
13464253Ifvrq1_minfluenza virus resistance QTL 1 (mouse)23303449252034492Mouse
1300577Capsq1_mcapsaicin sensitivity related QTL 1 (mouse)Not determined22760206084013384Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
1301480Pbwg1_mpostnatal body weight growth 1 (mouse)Not determined24182071975820843Mouse

Markers in Region
31.MMHAP64FRC10.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38251,730,135 - 51,730,285UniSTSGRCm38
MGSCv37251,585,655 - 51,585,805UniSTSGRCm37
Cytogenetic Map2C1.1UniSTS
Whitehead_YAC2 UniSTS
D2Mit243  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38251,694,208 - 51,694,329UniSTSGRCm38
MGSCv37251,549,728 - 51,549,849UniSTSGRCm37
Celera239,014,600 - 39,014,721UniSTS
Cytogenetic Map2C1.1UniSTS
cM Map233.0UniSTS
Whitehead Genetic232.8UniSTS
D2Mit243.1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38251,694,274 - 51,694,473UniSTSGRCm38
MGSCv37251,549,794 - 51,549,993UniSTSGRCm37
Celera239,014,456 - 39,014,655UniSTS
Cytogenetic Map2C1.1UniSTS
cM Map233.0UniSTS
cM Map2 UniSTS
Whitehead Genetic232.8UniSTS
Whitehead_YAC2 UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000143870
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,546,978 - 51,622,039 (-)Ensembl
GRCm38.p6 Ensembl251,656,966 - 51,732,009 (-)Ensembl
Ensembl Acc Id: ENSMUST00000302621
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,572,253 - 51,682,328 (-)Ensembl
Ensembl Acc Id: ENSMUST00000302622
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,566,765 - 51,599,579 (-)Ensembl
Ensembl Acc Id: ENSMUST00000302623
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,566,765 - 51,599,573 (-)Ensembl
Ensembl Acc Id: ENSMUST00000302624
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,566,912 - 51,599,638 (-)Ensembl
Ensembl Acc Id: ENSMUST00000302625
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl251,566,765 - 51,568,199 (-)Ensembl
RefSeq Acc Id: NR_040639
RefSeq Status: PREDICTED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39251,546,978 - 51,622,021 (-)NCBI
GRCm38251,656,966 - 51,732,009 (-)ENTREZGENE
Celera253,369,203 - 53,445,764 (-)ENTREZGENE
cM Map2 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000085014 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000143870 ENTREZGENE
MGD MGI:3650821 ENTREZGENE
NCBI Gene 433426 ENTREZGENE
PhenoGen Gm13490 PhenoGen
RNAcentral URS000075E722 RNACentral