Gm5760 (predicted gene 5760) - Rat Genome Database

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Gene: Gm5760 (predicted gene 5760) Mus musculus
Analyze
Symbol: Gm5760
Name: predicted gene 5760
RGD ID: 2294367
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG436219
Related Functional Gene: Gapdh  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X98,124,797 - 98,126,026 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX98,125,007 - 98,126,008 (-)EnsemblGRCm39 Ensembl
GRCm38X99,081,191 - 99,082,420 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX99,081,401 - 99,082,402 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X96,276,530 - 96,277,788 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X95,284,120 - 95,285,121 (-)NCBIMGSCv36mm8
CeleraX86,022,146 - 86,023,404 (-)NCBICelera
Cytogenetic MapXC3NCBI
cM MapX43.2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:6096136   PMID:11544199  


Genomics

Variants

.
Variants in Gm5760
24 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:168
Count of miRNA genes:158
Interacting mature miRNAs:164
Transcripts:ENSMUST00000119692
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined47179121129764756Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
4141665Mhysq2_mmale hybrid sterility QTL 2 (mouse)Not determined71453852139203212Mouse
12879918Shm4_msperm head morphology 4 (mouse)X72072050102062720Mouse
1357500Mdmsc6_mmodifier of muscularity 6 (mouse)Not determinedX75306671109306758Mouse
1302054Gct4_mgranulosa cell tumorigenesis 4 (mouse)Not determinedX76124336102062720Mouse
11075102Modc2_mmodifier of Odc2 (mouse)X80189914114190059Mouse
4141803Lmr30_mleishmaniasis resistance 30 (mouse)Not determined85062606119062720Mouse
13208552Wght12_mweight 12 (mouse)X94043606149782996Mouse
13208556Lgth14_mbody length 14 (mouse)X94043606149782996Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_007922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL954636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000119692
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX98,125,007 - 98,126,008 (-)Ensembl
GRCm38.p6 EnsemblX99,081,401 - 99,082,402 (-)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000083310 Ensembl, ENTREZGENE
MGD MGI:3647653 ENTREZGENE
NCBI Gene 436219 ENTREZGENE
PhenoGen Gm5760 PhenoGen