PRYP1 (PTPN13 like Y-linked pseudogene 1) - Rat Genome Database

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Gene: PRYP1 (PTPN13 like Y-linked pseudogene 1) Homo sapiens
Analyze
Symbol: PRYP1
Name: PTPN13 like Y-linked pseudogene 1
RGD ID: 2291812
HGNC Page HGNC:34018
Description:
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: INFERRED
Previously known as: PRY4P; PRYP7; PTPN13-like, Y-linked pseudogene 1; PTPN13-like, Y-linked pseudogene 7
Related Functional Gene: PRY  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38Y17,729,799 - 17,744,540 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblY17,729,528 - 17,744,596 (-)EnsemblGRCh38hg38GRCh38
GRCh37Y19,841,679 - 19,856,420 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36Y18,351,073 - 18,365,814 (-)NCBINCBI36Build 36hg18NCBI36
Cytogenetic MapYq11.222NCBI
T2T-CHM13v2.0Y18,636,351 - 18,651,097 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:12815422  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:292
Count of miRNA genes:275
Interacting mature miRNAs:287
Transcripts:ENST00000412474
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system hemolymphoid system integumental system nervous system respiratory system appendage
High
Medium
Low 1
Below cutoff 2 1 1 1 2 6 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000412474
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblY17,729,528 - 17,744,596 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC PRYP1 COSMIC
Ensembl Genes ENSG00000224166 Ensembl, ENTREZGENE
GTEx ENSG00000224166 GTEx
HGNC ID HGNC:34018 ENTREZGENE
Human Proteome Map PRYP1 Human Proteome Map
NCBI Gene 442863 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-08 PRYP1  PTPN13 like Y-linked pseudogene 1    PTPN13-like, Y-linked pseudogene 1  Symbol and/or name change 5135510 APPROVED
2016-03-04 PRYP1  PTPN13-like, Y-linked pseudogene 1  PRYP7  PTPN13-like, Y-linked pseudogene 7  Data merged from RGD:4110642 737654 PROVISIONAL