Dlx6os1 (distal-less homeobox 6, opposite strand 1) - Rat Genome Database

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Gene: Dlx6os1 (distal-less homeobox 6, opposite strand 1) Mus musculus
Analyze
Symbol: Dlx6os1
Name: distal-less homeobox 6, opposite strand 1
RGD ID: 2290525
MGI Page MGI
Description: Acts upstream of or within positive regulation of transcription by RNA polymerase II. Located in nucleus. Is expressed in branchial arch; forebrain; and reproductive system. Orthologous to human DLX6-AS1 (DLX6 antisense RNA 1).
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: A230055N17Rik; Dlx6; Dlx6as1; Evf; Evf-; Evf-1; Evf-2; Evf1; Evf1/; Evf1/2; Evf2; mEvf-; mEvf-1; Sh; Shhrs
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3966,820,543 - 6,871,627 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl66,749,740 - 6,871,632 (-)EnsemblGRCm39 Ensembl
GRCm3866,820,543 - 6,871,627 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl66,871,488 - 6,871,633 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl66,820,189 - 6,871,592 (-)EnsemblGRCm38mm10GRCm38
MGSCv3766,770,546 - 6,819,533 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3666,773,081 - 6,814,563 (-)NCBIMGSCv36mm8
Celera66,967,063 - 7,015,633 (-)NCBICelera
Cytogenetic Map6A1NCBI
cM Map62.68NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IDA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Mouse MP Annotation Import Pipeline RGD automated import pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:15183307   PMID:15376329   PMID:16107646   PMID:16141072   PMID:16141073   PMID:16705037  
PMID:18184812   PMID:18287559   PMID:18326838   PMID:18562676   PMID:18697905   PMID:19030180   PMID:19386638   PMID:19620975   PMID:20436479   PMID:20510229   PMID:21267068   PMID:21452241  
PMID:21765815   PMID:24089468   PMID:24316575   PMID:26138476   PMID:29055695   PMID:30146317   PMID:30529950   PMID:31340933   PMID:33377486   PMID:33593819   PMID:34671237   PMID:35038705  
PMID:35093327   PMID:35550840   PMID:36854759  


Genomics

Comparative Map Data
Dlx6os1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3966,820,543 - 6,871,627 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl66,749,740 - 6,871,632 (-)EnsemblGRCm39 Ensembl
GRCm3866,820,543 - 6,871,627 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl66,871,488 - 6,871,633 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl66,820,189 - 6,871,592 (-)EnsemblGRCm38mm10GRCm38
MGSCv3766,770,546 - 6,819,533 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3666,773,081 - 6,814,563 (-)NCBIMGSCv36mm8
Celera66,967,063 - 7,015,633 (-)NCBICelera
Cytogenetic Map6A1NCBI
cM Map62.68NCBI
DLX6-AS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38796,968,515 - 97,014,065 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl796,955,141 - 97,014,088 (-)EnsemblGRCh38hg38GRCh38
GRCh37796,597,827 - 96,643,377 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36796,470,895 - 96,471,540 (-)NCBINCBI36Build 36hg18NCBI36
Celera791,291,737 - 91,337,304 (-)NCBICelera
Cytogenetic Map7q21.3NCBI
HuRef791,199,569 - 91,244,961 (-)NCBIHuRef
CHM1_1796,524,228 - 96,573,416 (-)NCBICHM1_1
T2T-CHM13v2.0798,198,163 - 98,243,721 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2795,920,326 - 95,965,871 (-)NCBI

Variants

.
Variants in Dlx6os1
1381 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:370
Count of miRNA genes:311
Interacting mature miRNAs:330
Transcripts:ENSMUST00000159113, ENSMUST00000159568, ENSMUST00000159827, ENSMUST00000184182
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
14746985Manh59_mmandible shape 59 (mouse)6120847193Mouse
1301178Lith10_mlithogenic gene 10 (mouse)Not determined6121465015Mouse
10043884Bhr8_mbronchial hyperresponsiveness 8 (mouse)Not determined6121465015Mouse
10044000Mobq9_mmultigenetic obesity QTL 9 (mouse)Not determined6121465015Mouse
1357503Nhdlq5_mnon-HDL QTL 5 (mouse)Not determined6121465015Mouse
12904934Edlmmq4_mextensor digitorum longus muscle mass QTL 4 (mouse)6125514064Mouse
12904942Tammq3_mtibialis anterior muscle mass QTL 3 (mouse)6125514064Mouse
12904955Gmmq3_mgastrocnemius muscle mass QTL 3 (mouse)6125514064Mouse
1301131Chol2_mcholesterol 2 (mouse)Not determined6132144495Mouse
5491191Mobq2_mmultigenic obesity QTL 2 (mouse)Not determined6132144495Mouse
1302024Skull7_mskull morphology 7 (mouse)Not determined6132144495Mouse
15039372Nmrs22_mNAFLD-associated magnetic resonance shift 22 (mouse)6147633435476334Mouse
25440480Moaq2_mmodifier of alien QTL 2 (mouse)63050001117476961Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
1300731Smdq3_msegregation of mitochondrial DNA QTL 3 (mouse)Not determined6424920638249325Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487403016Mouse
11353836Bmiq1_mbody mass index QTL 1 (mouse)6450382329751333Mouse
11353840Bmiq2_mbody mass index QTL 2 (mouse)6450382345291115Mouse
1357520Axtq2_manxiety QTL 2 (mouse)Not determined6450382348703611Mouse
1357481Aaj2_manxiety in A/J 2 (mouse)Not determined6450382348703611Mouse
11353841Bmiq3_mbody mass index QTL 3 (mouse)6450382348703611Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396633110Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396633110Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396633110Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396633110Mouse

Markers in Region
Dlx6os1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3866,820,632 - 6,821,178UniSTSGRCm38
MGSCv3766,770,632 - 6,771,178UniSTSGRCm37
Celera66,967,149 - 6,967,695UniSTS
Cytogenetic Map6A1UniSTS
cM Map62.68UniSTS
cM Map62.0UniSTS
cM Map62.0UniSTS
Dlx6  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3866,867,097 - 6,867,913UniSTSGRCm38
MGSCv3766,817,097 - 6,817,913UniSTSGRCm37
Cytogenetic Map6A1UniSTS
cM Map62.0UniSTS
RH91820  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3866,868,251 - 6,868,444UniSTSGRCm38
MGSCv3766,818,251 - 6,818,444UniSTSGRCm37
Celera67,014,351 - 7,014,544UniSTS
Cytogenetic Map6A1UniSTS
cM Map62.0UniSTS
cM Map62.0UniSTS
Dlx6os1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6A1UniSTS
cM Map62.68UniSTS
cM Map62.0UniSTS
Dlx6os1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6A1UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000159568
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl66,820,543 - 6,871,632 (-)Ensembl
GRCm38.p6 Ensembl66,820,543 - 6,871,592 (-)Ensembl
RefSeq Acc Id: ENSMUST00000159827
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl66,820,189 - 6,869,533 (-)Ensembl
GRCm38.p6 Ensembl66,820,189 - 6,861,591 (-)Ensembl
RefSeq Acc Id: ENSMUST00000184182
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl66,871,488 - 6,871,633 (-)Ensembl
RefSeq Acc Id: ENSMUST00000210702
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl66,824,188 - 6,830,791 (-)Ensembl
GRCm38.p6 Ensembl66,824,188 - 6,830,791 (-)Ensembl
RefSeq Acc Id: ENSMUST00000241210
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl66,820,573 - 6,861,677 (-)Ensembl
RefSeq Acc Id: ENSMUST00000241347
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl66,820,543 - 6,869,540 (-)Ensembl
RefSeq Acc Id: ENSMUST00000242545
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl66,822,059 - 6,871,627 (-)Ensembl
RefSeq Acc Id: ENSMUST00000243016
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl66,822,057 - 6,871,631 (-)Ensembl
RefSeq Acc Id: ENSMUST00000244057
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl66,822,057 - 6,871,627 (-)Ensembl
RefSeq Acc Id: ENSMUST00000245213
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl66,820,545 - 6,862,830 (-)Ensembl
RefSeq Acc Id: ENSMUST00000245257
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl66,820,569 - 6,871,629 (-)Ensembl
RefSeq Acc Id: ENSMUST00000245502
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl66,820,569 - 6,861,683 (-)Ensembl
RefSeq Acc Id: ENSMUST00000245862
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl66,749,740 - 6,869,551 (-)Ensembl
RefSeq Acc Id: ENSMUST00000247005
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl66,820,569 - 6,861,683 (-)Ensembl
RefSeq Acc Id: NR_015388
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3966,820,543 - 6,869,533 (-)NCBI
GRCm3866,820,543 - 6,869,533 (-)NCBI
MGSCv3766,770,546 - 6,819,533 (-)RGD
Celera66,967,063 - 7,015,633 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_155495
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3966,820,543 - 6,861,683 (-)NCBI
GRCm3866,820,543 - 6,861,683 (-)NCBI
Sequence:
RefSeq Acc Id: NR_155496
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3966,820,543 - 6,871,627 (-)NCBI
GRCm3866,820,543 - 6,871,627 (-)NCBI
Sequence:
Promoters
RGD ID:6888964
Promoter ID:EPDNEW_M7933
Type:multiple initiation site
Name:Dlx6os1_2
Description:Mus musculus distal-less homeobox 6, opposite strand 1 , longnon-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M7936  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3866,861,683 - 6,861,743EPDNEW
RGD ID:6888970
Promoter ID:EPDNEW_M7936
Type:initiation region
Name:Dlx6os1_1
Description:Mus musculus distal-less homeobox 6, opposite strand 1 , longnon-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M7933  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3866,869,533 - 6,869,593EPDNEW
RGD ID:15093029
Promoter ID:EPDNEWNC_M933
Type:single initiation site
Name:Dlx6os1_1
Description:distal-less homeobox 6, opposite strand 1 [Source:MGISymbol;Acc:MGI:2443217]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3866,871,627 - 6,871,687EPDNEWNC

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2443217 AgrOrtholog
Ensembl Genes ENSMUSG00000090063 Ensembl
  ENSMUSG00000098326 Ensembl
MGD MGI:2443217 ENTREZGENE
NCBI Gene 320038 ENTREZGENE
PhenoGen Dlx6os1 PhenoGen
RNAcentral URS0000D77F37 RNACentral
  URS0000D77FEF RNACentral
  URS0000D78013 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-11-26 Dlx6os1  distal-less homeobox 6, opposite strand 1    Dlx6 opposite strand transcript 1  Symbol and/or name change 5135510 APPROVED
2013-10-22 Dlx6os1  Dlx6 opposite strand transcript 1    Dlx6 opposite strand RNA 1  Symbol and/or name change 5135510 APPROVED
2013-08-06 Dlx6os1  Dlx6 opposite strand RNA 1  Dlx6as1  Dlx6 antisense RNA 1  Symbol and/or name change 5135510 APPROVED
2011-11-22 Dlx6as1  Dlx6 antisense RNA 1  Dlx6os1  Dlx6 opposite strand transcript 1  Symbol and/or name change 5135510 APPROVED