St3gal3 (ST3 beta-galactoside alpha-2,3-sialyltransferase 3) - Rat Genome Database

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Advanced Search (OLGA)
Gene: St3gal3 (ST3 beta-galactoside alpha-2,3-sialyltransferase 3) Heterocephalus glaber
Analyze
Symbol: St3gal3
Name: ST3 beta-galactoside alpha-2,3-sialyltransferase 3
RGD ID: 18936712
Description: ENCODES a protein that exhibits beta-galactoside (CMP) alpha-2,3-sialyltransferase activity (ortholog); INVOLVED IN ganglioside biosynthetic process via lactosylceramide (ortholog); protein glycosylation (ortholog); ASSOCIATED WITH autosomal recessive intellectual developmental disorder 12 (ortholog); Charcot-Marie-Tooth disease dominant intermediate C (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN Golgi apparatus (inferred); Golgi membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248922,984,351 - 3,213,021 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248922,984,329 - 3,213,017 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
St3gal3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248922,984,351 - 3,213,021 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248922,984,329 - 3,213,017 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ST3GAL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38143,707,536 - 43,931,159 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl143,705,824 - 43,931,165 (+)EnsemblGRCh38hg38GRCh38
GRCh37144,173,207 - 44,396,831 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36143,945,805 - 44,169,418 (+)NCBINCBI36Build 36hg18NCBI36
Celera142,455,047 - 42,680,364 (+)NCBICelera
Cytogenetic Map1p34.1NCBI
HuRef142,293,634 - 42,515,711 (+)NCBIHuRef
CHM1_1144,289,496 - 44,513,069 (+)NCBICHM1_1
T2T-CHM13v2.0143,578,028 - 43,802,236 (+)NCBIT2T-CHM13v2.0
St3gal3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394117,789,349 - 117,992,169 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4117,789,351 - 117,992,111 (-)EnsemblGRCm39 Ensembl
GRCm384117,932,152 - 118,134,972 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4117,932,154 - 118,134,914 (-)EnsemblGRCm38mm10GRCm38
MGSCv374117,604,758 - 117,807,519 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364117,430,086 - 117,632,822 (-)NCBIMGSCv36mm8
Celera4116,647,820 - 116,857,856 (-)NCBICelera
Cytogenetic Map4D1- D2.1NCBI
cM Map453.84NCBI
St3gal3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85136,755,780 - 136,958,081 (-)NCBIGRCr8
mRatBN7.25131,470,348 - 131,670,794 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5131,470,348 - 131,670,810 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5134,176,350 - 134,378,439 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05135,930,969 - 136,133,076 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05135,953,391 - 136,155,481 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05136,765,309 - 136,965,642 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5136,766,208 - 136,965,191 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05140,554,358 - 140,753,581 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45138,397,472 - 138,599,287 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15138,402,697 - 138,604,513 (-)NCBI
Celera5130,019,450 - 130,217,682 (-)NCBICelera
Cytogenetic Map5q36NCBI
St3gal3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555373,258,076 - 3,458,742 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555373,258,076 - 3,458,742 (+)NCBIChiLan1.0ChiLan1.0
ST3GAL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21182,878,513 - 183,104,460 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11182,019,836 - 182,245,213 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0143,006,963 - 43,232,968 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1144,409,904 - 44,603,658 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl144,409,904 - 44,603,658 (+)Ensemblpanpan1.1panPan2
ST3GAL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11516,324,752 - 16,434,256 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1516,324,899 - 16,401,616 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1516,445,523 - 16,643,025 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01516,479,182 - 16,676,777 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1516,479,317 - 16,652,728 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11516,278,024 - 16,475,534 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01516,347,032 - 16,543,790 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01516,419,773 - 16,617,308 (-)NCBIUU_Cfam_GSD_1.0
St3gal3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505859,234,110 - 59,423,591 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647425,058,892 - 25,248,378 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647425,058,892 - 25,248,378 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ST3GAL3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6167,363,347 - 167,595,835 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16167,363,348 - 167,596,892 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26154,849,032 - 154,958,719 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ST3GAL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12088,875,525 - 89,108,001 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603327,817,002 - 28,051,211 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013068176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013068177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013068178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013068179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021249935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021249936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002391515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002391516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01100293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01100294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01100295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01100296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01100297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01100298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01100299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01100300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01100301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01100302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01100303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01100304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01100305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GEBF01004431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000003776   ⟹   ENSHGLP00000003721
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248922,984,351 - 3,213,021 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000003777   ⟹   ENSHGLP00000003722
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248922,984,554 - 3,213,021 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000003778   ⟹   ENSHGLP00000003723
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248923,011,444 - 3,212,094 (+)Ensembl
RefSeq Acc Id: XM_013068176   ⟹   XP_012923630
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248922,984,329 - 3,213,017 (+)NCBI
RefSeq Acc Id: XM_013068177   ⟹   XP_012923631
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248922,984,329 - 3,213,017 (+)NCBI
RefSeq Acc Id: XM_013068178   ⟹   XP_012923632
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248922,984,329 - 3,213,017 (+)NCBI
RefSeq Acc Id: XM_013068179   ⟹   XP_012923633
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248922,984,329 - 3,213,017 (+)NCBI
RefSeq Acc Id: XM_021249935   ⟹   XP_021105594
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248923,056,567 - 3,213,017 (+)NCBI
RefSeq Acc Id: XM_021249936   ⟹   XP_021105595
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248922,984,329 - 3,195,815 (+)NCBI
RefSeq Acc Id: XR_002391515
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248922,984,329 - 3,213,017 (+)NCBI
RefSeq Acc Id: XR_002391516
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248922,984,329 - 3,213,017 (+)NCBI
RefSeq Acc Id: XP_012923630   ⟸   XM_013068176
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J4E5 (UniProtKB/TrEMBL),   G5AQF4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012923632   ⟸   XM_013068178
- Peptide Label: isoform X4
- UniProtKB: A0AAX6QQM5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012923631   ⟸   XM_013068177
- Peptide Label: isoform X2
- UniProtKB: G5AQF4 (UniProtKB/TrEMBL),   A0AAX6QQW6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012923633   ⟸   XM_013068179
- Peptide Label: isoform X6
- UniProtKB: A0AAX6QQL0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021105595   ⟸   XM_021249936
- Peptide Label: isoform X5
- UniProtKB: A0AAX6SD01 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021105594   ⟸   XM_021249935
- Peptide Label: isoform X3
- UniProtKB: G5AQF4 (UniProtKB/TrEMBL),   A0AAX6SA43 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000003722   ⟸   ENSHGLT00000003777
Ensembl Acc Id: ENSHGLP00000003723   ⟸   ENSHGLT00000003778
Ensembl Acc Id: ENSHGLP00000003721   ⟸   ENSHGLT00000003776


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000002741 Ensembl, ENTREZGENE
  ENSHGLG00100012187 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000003776 ENTREZGENE
  ENSHGLT00000003777 ENTREZGENE
  ENSHGLT00100052646 UniProtKB/TrEMBL
Gene3D-CATH 3.90.1480.20 UniProtKB/TrEMBL
InterPro Glyco_trans_29 UniProtKB/TrEMBL
  Glycosyltransferase_29 UniProtKB/TrEMBL
  GT29-like_sf UniProtKB/TrEMBL
  Sialyl_trans UniProtKB/TrEMBL
KEGG Report hgl:101716398 UniProtKB/TrEMBL
NCBI Gene St3gal3 ENTREZGENE
PANTHER CMP-N-ACETYLNEURAMINATE-BETA-1,4-GALACTOSIDE ALPHA-2,3-SIALYLTRANSFERASE UniProtKB/TrEMBL
  SIALYLTRANSFERASE UniProtKB/TrEMBL
Pfam Glyco_transf_29 UniProtKB/TrEMBL
PIRSF Sialyl_trans UniProtKB/TrEMBL
UniProt A0A0P6J4E5 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6QQL0 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6QQM5 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6QQW6 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SA43 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SD01 ENTREZGENE, UniProtKB/TrEMBL
  G5AQF4 ENTREZGENE, UniProtKB/TrEMBL