St3gal3 (ST3 beta-galactoside alpha-2,3-sialyltransferase 3) - Rat Genome Database

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Gene: St3gal3 (ST3 beta-galactoside alpha-2,3-sialyltransferase 3) Chinchilla lanigera
Analyze
Symbol: St3gal3
Name: ST3 beta-galactoside alpha-2,3-sialyltransferase 3
RGD ID: 8718319
Description: ENCODES a protein that exhibits beta-galactoside (CMP) alpha-2,3-sialyltransferase activity (ortholog); INVOLVED IN ganglioside biosynthetic process via lactosylceramide (ortholog); protein glycosylation (ortholog); ASSOCIATED WITH autosomal recessive intellectual developmental disorder 12 (ortholog); Charcot-Marie-Tooth disease dominant intermediate C (ortholog); developmental and epileptic encephalopathy (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555373,258,076 - 3,458,742 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555373,258,076 - 3,458,742 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
St3gal3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555373,258,076 - 3,458,742 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555373,258,076 - 3,458,742 (+)NCBIChiLan1.0ChiLan1.0
ST3GAL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38143,707,536 - 43,931,159 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl143,705,824 - 43,931,165 (+)EnsemblGRCh38hg38GRCh38
GRCh37144,173,207 - 44,396,831 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36143,945,805 - 44,169,418 (+)NCBINCBI36Build 36hg18NCBI36
Celera142,455,047 - 42,680,364 (+)NCBICelera
Cytogenetic Map1p34.1NCBI
HuRef142,293,634 - 42,515,711 (+)NCBIHuRef
CHM1_1144,289,496 - 44,513,069 (+)NCBICHM1_1
T2T-CHM13v2.0143,578,028 - 43,802,236 (+)NCBIT2T-CHM13v2.0
St3gal3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394117,789,349 - 117,992,169 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4117,789,351 - 117,992,111 (-)EnsemblGRCm39 Ensembl
GRCm384117,932,152 - 118,134,972 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4117,932,154 - 118,134,914 (-)EnsemblGRCm38mm10GRCm38
MGSCv374117,604,758 - 117,807,519 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364117,430,086 - 117,632,822 (-)NCBIMGSCv36mm8
Celera4116,647,820 - 116,857,856 (-)NCBICelera
Cytogenetic Map4D1- D2.1NCBI
cM Map453.84NCBI
St3gal3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85136,755,780 - 136,958,081 (-)NCBIGRCr8
mRatBN7.25131,470,348 - 131,670,794 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5131,470,348 - 131,670,810 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5134,176,350 - 134,378,439 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05135,930,969 - 136,133,076 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05135,953,391 - 136,155,481 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05136,765,309 - 136,965,642 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5136,766,208 - 136,965,191 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05140,554,358 - 140,753,581 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45138,397,472 - 138,599,287 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15138,402,697 - 138,604,513 (-)NCBI
Celera5130,019,450 - 130,217,682 (-)NCBICelera
Cytogenetic Map5q36NCBI
ST3GAL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21182,878,513 - 183,104,460 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11182,019,836 - 182,245,213 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0143,006,963 - 43,232,968 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1144,409,904 - 44,603,658 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl144,409,904 - 44,603,658 (+)Ensemblpanpan1.1panPan2
ST3GAL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11516,324,752 - 16,434,256 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1516,324,899 - 16,401,616 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1516,445,523 - 16,643,025 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01516,479,182 - 16,676,777 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1516,479,317 - 16,652,728 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11516,278,024 - 16,475,534 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01516,347,032 - 16,543,790 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01516,419,773 - 16,617,308 (-)NCBIUU_Cfam_GSD_1.0
St3gal3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505859,234,110 - 59,423,591 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647425,058,892 - 25,248,378 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647425,058,892 - 25,248,378 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ST3GAL3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6167,363,347 - 167,595,835 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16167,363,348 - 167,596,892 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26154,849,032 - 154,958,719 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ST3GAL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12088,875,525 - 89,108,001 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603327,817,002 - 28,051,211 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
St3gal3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248922,984,351 - 3,213,021 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248922,984,329 - 3,213,017 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000004963   ⟹   ENSCLAP00000004871
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555373,258,076 - 3,458,742 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000004964   ⟹   ENSCLAP00000004872
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555373,258,077 - 3,458,742 (+)Ensembl
RefSeq Acc Id: XM_005410678   ⟹   XP_005410735
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555373,258,077 - 3,458,742 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005410679   ⟹   XP_005410736
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555373,258,076 - 3,458,742 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005410735 (Get FASTA)   NCBI Sequence Viewer  
  XP_005410736 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000004871
  ENSCLAP00000004871.1
  ENSCLAP00000004872
  ENSCLAP00000004872.1
Reference Protein Sequences
RefSeq Acc Id: XP_005410735   ⟸   XM_005410678
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UT97 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005410736   ⟸   XM_005410679
- Peptide Label: isoform X2
- UniProtKB: A0A8C2YKA4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000004871   ⟸   ENSCLAT00000004963
RefSeq Acc Id: ENSCLAP00000004872   ⟸   ENSCLAT00000004964


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000003460 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000004963 ENTREZGENE
  ENSCLAT00000004963.1 UniProtKB/TrEMBL
  ENSCLAT00000004964 ENTREZGENE
  ENSCLAT00000004964.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.1480.20 UniProtKB/TrEMBL
InterPro Glyco_trans_29 UniProtKB/TrEMBL
  GT29-like_sf UniProtKB/TrEMBL
  Sialyl_trans UniProtKB/TrEMBL
NCBI Gene St3gal3 ENTREZGENE
PANTHER CMP-N-ACETYLNEURAMINATE-BETA-1,4-GALACTOSIDE ALPHA-2,3-SIALYLTRANSFERASE UniProtKB/TrEMBL
  SIALYLTRANSFERASE UniProtKB/TrEMBL
Pfam Glyco_transf_29 UniProtKB/TrEMBL
PIRSF Sialyl_trans UniProtKB/TrEMBL
UniProt A0A8C2UT97 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2YKA4 ENTREZGENE, UniProtKB/TrEMBL