Il1rapl2 (interleukin 1 receptor accessory protein like 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Il1rapl2 (interleukin 1 receptor accessory protein like 2) Heterocephalus glaber
Analyze
Symbol: Il1rapl2
Name: interleukin 1 receptor accessory protein like 2
RGD ID: 18936437
Description: ENCODES a protein that exhibits hydrolase activity (inferred); INVOLVED IN regulation of presynapse assembly (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog); FOUND IN glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: X-linked interleukin-1 receptor accessory protein-like 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480310,919,651 - 12,243,480 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480310,917,671 - 12,315,002 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Il1rapl2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480310,919,651 - 12,243,480 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480310,917,671 - 12,315,002 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
IL1RAPL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X104,566,199 - 105,767,829 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX104,566,199 - 105,767,829 (+)EnsemblGRCh38hg38GRCh38
GRCh37X103,810,880 - 105,011,822 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X103,697,652 - 104,898,478 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X103,617,140 - 104,817,967NCBI
CeleraX104,285,598 - 105,486,376 (+)NCBICelera
Cytogenetic MapXq22.3NCBI
HuRefX93,435,071 - 94,637,503 (+)NCBIHuRef
CHM1_1X103,721,823 - 104,923,126 (+)NCBICHM1_1
T2T-CHM13v2.0X102,997,341 - 104,199,639 (+)NCBIT2T-CHM13v2.0
Il1rapl2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X136,471,503 - 137,749,826 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX136,471,357 - 137,747,695 (+)EnsemblGRCm39 Ensembl
GRCm38X137,570,754 - 138,849,077 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX137,570,608 - 138,846,946 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X134,106,088 - 135,381,494 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X132,917,913 - 134,193,319 (+)NCBIMGSCv36mm8
CeleraX120,847,137 - 122,116,600 (+)NCBICelera
Cytogenetic MapXF1NCBI
cM MapX59.1NCBI
Il1rapl2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X105,547,403 - 107,080,369 (+)NCBIGRCr8
mRatBN7.2X100,961,509 - 102,271,753 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX100,961,812 - 102,271,753 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX103,091,652 - 104,402,604 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X106,590,329 - 107,901,342 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X104,159,516 - 105,470,309 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X108,287,034 - 109,851,075 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX108,287,068 - 109,851,047 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X108,785,045 - 109,131,750 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0X108,150,787 - 108,254,866 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0X109,679,033 - 109,708,181 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X125,013,154 - 126,352,850 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX101,764,259 - 103,062,805 (+)NCBICelera
Cytogenetic MapXq32NCBI
Il1rapl2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555481,518,695 - 2,623,232 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555481,462,746 - 2,623,622 (+)NCBIChiLan1.0ChiLan1.0
IL1RAPL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X104,717,496 - 105,287,774 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X104,721,096 - 105,291,374 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X93,689,575 - 94,904,887 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X104,068,596 - 105,283,662 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX104,161,023 - 105,283,494 (+)Ensemblpanpan1.1panPan2
IL1RAPL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X77,918,264 - 78,959,932 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX64,099,554 - 65,432,679 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X79,587,004 - 80,920,111 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1X77,071,569 - 78,402,563 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X78,775,315 - 80,098,087 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X79,222,860 - 79,875,803 (+)NCBIUU_Cfam_GSD_1.0
Il1rapl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X77,812,504 - 78,870,601 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364998,790,139 - 9,771,800 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364998,788,093 - 9,048,583 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IL1RAPL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX85,347,857 - 86,463,507 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X85,347,867 - 86,464,670 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X100,533,436 - 100,826,715 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103232439
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X92,433,337 - 93,646,131 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606518,591,761 - 18,651,036 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021241626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01072256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01072339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GEBF01000881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000002628   ⟹   ENSHGLP00000002576
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462480310,919,651 - 12,243,480 (-)Ensembl
RefSeq Acc Id: XM_021241626   ⟹   XP_021097285
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480310,917,671 - 12,315,002 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021097285 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000002576
GenBank Protein JAO02752 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021097285   ⟸   XM_021241626
- UniProtKB: A0A0P6JHM8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000002576   ⟸   ENSHGLT00000002628


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000001940 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000002628 ENTREZGENE
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.40.50.10140 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  IL-1_rcpt_fam UniProtKB/TrEMBL
  TIR_dom UniProtKB/TrEMBL
  Toll_tir_struct_dom_sf UniProtKB/TrEMBL
NCBI Gene Il1rapl2 ENTREZGENE
PANTHER PTHR11890 UniProtKB/TrEMBL
  X-LINKED INTERLEUKIN-1 RECEPTOR ACCESSORY PROTEIN-LIKE 2 UniProtKB/TrEMBL
Pfam I-set UniProtKB/TrEMBL
  Ig_2 UniProtKB/TrEMBL
  TIR UniProtKB/TrEMBL
PRINTS INTRLKN1R1F UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
  TIR UniProtKB/TrEMBL
SMART IGc2 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
  TIR UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF52200 UniProtKB/TrEMBL
UniProt A0A0P6JHM8 ENTREZGENE, UniProtKB/TrEMBL