Lyrm9 (LYR motif containing 9) - Rat Genome Database

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Gene: Lyrm9 (LYR motif containing 9) Heterocephalus glaber
Analyze
Symbol: Lyrm9
Name: LYR motif containing 9
RGD ID: 18935709
Description: ASSOCIATED WITH lung small cell carcinoma (ortholog); FOUND IN mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LYR motif containing protein 9; LYR motif-containing protein 9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624786618,821 - 631,478 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624786615,278 - 677,666 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Genomics

Comparative Map Data
Lyrm9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624786618,821 - 631,478 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624786615,278 - 677,666 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
LYRM9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381727,878,358 - 27,893,365 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1727,878,314 - 27,894,752 (-)EnsemblGRCh38hg38GRCh38
GRCh371726,205,384 - 26,220,391 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361723,229,467 - 23,244,536 (-)NCBINCBI36Build 36hg18NCBI36
Celera1723,067,202 - 23,082,270 (-)NCBICelera
Cytogenetic Map17q11.2NCBI
HuRef1722,412,270 - 22,427,337 (-)NCBIHuRef
CHM1_11726,268,059 - 26,283,099 (-)NCBICHM1_1
T2T-CHM13v2.01728,819,756 - 28,834,759 (-)NCBIT2T-CHM13v2.0
Lyrm9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391178,717,421 - 78,734,725 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1178,717,410 - 78,737,696 (+)EnsemblGRCm39 Ensembl
GRCm381178,826,595 - 78,843,899 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1178,826,584 - 78,846,870 (+)EnsemblGRCm38mm10GRCm38
MGSCv371178,640,097 - 78,657,401 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361178,642,799 - 78,654,461 (+)NCBIMGSCv36mm8
Celera1188,458,955 - 88,476,259 (+)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1146.74NCBI
Lyrm9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81064,223,732 - 64,237,791 (+)NCBIGRCr8
mRatBN7.21063,725,718 - 63,739,772 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1063,725,743 - 63,739,772 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1068,355,673 - 68,369,733 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01067,861,022 - 67,875,082 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01063,330,953 - 63,344,941 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01066,099,478 - 66,113,559 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1066,099,531 - 66,113,559 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01065,531,688 - 65,545,716 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41064,947,045 - 64,960,104 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1062,701,485 - 62,715,518 (+)NCBICelera
Cytogenetic Map10q25NCBI
Lyrm9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554815,113,810 - 5,118,198 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554815,113,810 - 5,118,141 (+)NCBIChiLan1.0ChiLan1.0
LYRM9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21936,566,006 - 36,581,084 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11738,449,533 - 38,464,582 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01728,884,929 - 28,900,024 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11729,387,048 - 29,397,874 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1729,393,491 - 29,397,874 (+)Ensemblpanpan1.1panPan2
LYRM9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1942,269,937 - 42,303,499 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha941,427,146 - 41,443,765 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0943,088,660 - 43,105,264 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl943,090,075 - 43,105,209 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1941,868,961 - 41,885,574 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0942,164,133 - 42,180,723 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0942,241,087 - 42,257,684 (-)NCBIUU_Cfam_GSD_1.0
Lyrm9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560241,302,149 - 41,316,066 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365384,180,133 - 4,193,635 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365384,180,094 - 4,193,638 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LYRM9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1244,271,524 - 44,289,612 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11244,271,407 - 44,289,687 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21246,118,407 - 46,136,659 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LYRM9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11621,650,330 - 21,665,913 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660758,474,342 - 8,489,921 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000021450   ⟹   ENSHGLP00000021246
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624786618,821 - 631,478 (-)Ensembl
RefSeq Acc Id: XM_004856968   ⟹   XP_004857025
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624786615,307 - 631,504 (-)NCBI
RefSeq Acc Id: XM_021238124   ⟹   XP_021093783
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624786615,306 - 677,666 (-)NCBI
RefSeq Acc Id: XM_021238125   ⟹   XP_021093784
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624786615,279 - 677,666 (-)NCBI
RefSeq Acc Id: XM_021238126   ⟹   XP_021093785
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624786615,278 - 624,600 (-)NCBI
RefSeq Acc Id: XM_021238127   ⟹   XP_021093786
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624786615,278 - 627,458 (-)NCBI
RefSeq Acc Id: XM_021238128   ⟹   XP_021093787
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624786618,821 - 631,701 (-)NCBI
RefSeq Acc Id: XM_021238129   ⟹   XP_021093788
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624786618,821 - 624,524 (-)NCBI
RefSeq Acc Id: XP_021093786   ⟸   XM_021238127
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021093785   ⟸   XM_021238126
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021093784   ⟸   XM_021238125
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021093783   ⟸   XM_021238124
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004857025   ⟸   XM_004856968
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021093787   ⟸   XM_021238128
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021093788   ⟸   XM_021238129
- Peptide Label: isoform X3
- UniProtKB: A0A0P6J668 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000021246   ⟸   ENSHGLT00000021450


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000015182 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000021450 ENTREZGENE
InterPro Complex1_LYR UniProtKB/TrEMBL
  Complex1_LYR_LYRM9 UniProtKB/TrEMBL
  Complex_I_LYR UniProtKB/TrEMBL
NCBI Gene Lyrm9 ENTREZGENE
PANTHER LYR MOTIF-CONTAINING PROTEIN 9 UniProtKB/TrEMBL
  LYR MOTIF-CONTAINING PROTEIN 9 UniProtKB/TrEMBL
Pfam Complex1_LYR UniProtKB/TrEMBL
UniProt A0A0P6J668 ENTREZGENE, UniProtKB/TrEMBL