Lyrm9 (LYR motif containing 9) - Rat Genome Database

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Gene: Lyrm9 (LYR motif containing 9) Ictidomys tridecemlineatus
Analyze
Symbol: Lyrm9
Name: LYR motif containing 9
RGD ID: 12450162
Description: ASSOCIATED WITH genetic disease (ortholog); lung small cell carcinoma (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LYR motif containing 9, transcript variant X1; LYR motif containing 9, transcript variant X2; LYR motif-containing protein 9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560241,302,149 - 41,316,066 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365384,180,133 - 4,193,635 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365384,180,094 - 4,193,638 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
Lyrm9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560241,302,149 - 41,316,066 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365384,180,133 - 4,193,635 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365384,180,094 - 4,193,638 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LYRM9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381727,878,358 - 27,893,365 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1727,878,314 - 27,894,752 (-)EnsemblGRCh38hg38GRCh38
GRCh371726,205,384 - 26,220,391 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361723,229,467 - 23,244,536 (-)NCBINCBI36Build 36hg18NCBI36
Celera1723,067,202 - 23,082,270 (-)NCBICelera
Cytogenetic Map17q11.2NCBI
HuRef1722,412,270 - 22,427,337 (-)NCBIHuRef
CHM1_11726,268,059 - 26,283,099 (-)NCBICHM1_1
T2T-CHM13v2.01728,819,756 - 28,834,759 (-)NCBIT2T-CHM13v2.0
Lyrm9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391178,717,421 - 78,734,725 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1178,717,410 - 78,737,696 (+)EnsemblGRCm39 Ensembl
GRCm381178,826,595 - 78,843,899 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1178,826,584 - 78,846,870 (+)EnsemblGRCm38mm10GRCm38
MGSCv371178,640,097 - 78,657,401 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361178,642,799 - 78,654,461 (+)NCBIMGSCv36mm8
Celera1188,458,955 - 88,476,259 (+)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1146.74NCBI
Lyrm9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81064,223,732 - 64,237,791 (+)NCBIGRCr8
mRatBN7.21063,725,718 - 63,739,772 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1063,725,743 - 63,739,772 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1068,355,673 - 68,369,733 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01067,861,022 - 67,875,082 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01063,330,953 - 63,344,941 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01066,099,478 - 66,113,559 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1066,099,531 - 66,113,559 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01065,531,688 - 65,545,716 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41064,947,045 - 64,960,104 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1062,701,485 - 62,715,518 (+)NCBICelera
Cytogenetic Map10q25NCBI
Lyrm9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554815,113,810 - 5,118,198 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554815,113,810 - 5,118,141 (+)NCBIChiLan1.0ChiLan1.0
LYRM9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21936,566,006 - 36,581,084 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11738,449,533 - 38,464,582 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01728,884,929 - 28,900,024 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11729,387,048 - 29,397,874 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1729,393,491 - 29,397,874 (+)Ensemblpanpan1.1panPan2
LYRM9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1942,269,937 - 42,303,499 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha941,427,146 - 41,443,765 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0943,088,660 - 43,105,264 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl943,090,075 - 43,105,209 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1941,868,961 - 41,885,574 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0942,164,133 - 42,180,723 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0942,241,087 - 42,257,684 (-)NCBIUU_Cfam_GSD_1.0
LYRM9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1244,271,524 - 44,289,612 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11244,271,407 - 44,289,687 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21246,118,407 - 46,136,659 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LYRM9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11621,650,330 - 21,665,913 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660758,474,342 - 8,489,921 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lyrm9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624786618,821 - 631,478 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624786615,278 - 677,666 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000021389   ⟹   ENSSTOP00000016148
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365384,180,133 - 4,193,635 (-)Ensembl
RefSeq Acc Id: XM_005327805   ⟹   XP_005327862
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560241,302,149 - 41,315,733 (-)NCBI
SpeTri2.0NW_0049365384,180,094 - 4,193,638 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021728074   ⟹   XP_021583749
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560241,302,149 - 41,315,716 (-)NCBI
SpeTri2.0NW_0049365384,180,094 - 4,193,635 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040269162   ⟹   XP_040125096
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560241,302,149 - 41,316,066 (-)NCBI
RefSeq Acc Id: XM_040269163   ⟹   XP_040125097
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560241,302,149 - 41,315,710 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005327862 (Get FASTA)   NCBI Sequence Viewer  
  XP_021583749 (Get FASTA)   NCBI Sequence Viewer  
  XP_040125096 (Get FASTA)   NCBI Sequence Viewer  
  XP_040125097 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000016148.1
GenBank Protein KAG3269559 (Get FASTA)   NCBI Sequence Viewer  
  KAG3269560 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005327862   ⟸   XM_005327805
- UniProtKB: I3MVK3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021583749   ⟸   XM_021728074
- UniProtKB: I3MVK3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040125096   ⟸   XM_040269162
- UniProtKB: I3MVK3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040125097   ⟸   XM_040269163
- UniProtKB: I3MVK3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000016148   ⟸   ENSSTOT00000021389
Protein Domains
Complex 1 LYR protein


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000027455 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000021389.2 UniProtKB/TrEMBL
InterPro Complex1_LYR UniProtKB/TrEMBL
  Complex1_LYR_LYRM9 UniProtKB/TrEMBL
NCBI Gene Lyrm9 ENTREZGENE
PANTHER LYR MOTIF-CONTAINING PROTEIN 9 UniProtKB/TrEMBL
  LYR MOTIF-CONTAINING PROTEIN 9 UniProtKB/TrEMBL
Pfam Complex1_LYR UniProtKB/TrEMBL
UniProt I3MVK3 ENTREZGENE, UniProtKB/TrEMBL