Rsph3 (radial spoke head 3) - Rat Genome Database

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Gene: Rsph3 (radial spoke head 3) Heterocephalus glaber
Analyze
Symbol: Rsph3
Name: radial spoke head 3
RGD ID: 18935218
Description: ASSOCIATED WITH 3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome (ortholog); chromosome 6q24-q25 deletion syndrome (ortholog); genetic disease (ortholog); FOUND IN cilium (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: radial spoke 3 homolog; radial spoke head 3 homolog; radial spoke head protein 3 homolog; Radial spoke head protein 3-like protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624929661,495 - 682,072 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624929661,257 - 682,772 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cilium  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Rsph3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624929661,495 - 682,072 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624929661,257 - 682,772 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
RSPH3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386158,962,980 - 159,000,202 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6158,972,871 - 159,000,202 (-)EnsemblGRCh38hg38GRCh38
GRCh376159,393,903 - 159,421,234 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366159,318,254 - 159,341,186 (-)NCBINCBI36Build 36hg18NCBI36
Build 346159,368,676 - 159,391,607NCBI
Celera6160,046,571 - 160,069,312 (-)NCBICelera
Cytogenetic Map6q25.3NCBI
HuRef6156,868,976 - 156,891,903 (-)NCBIHuRef
CHM1_16159,660,720 - 159,683,640 (-)NCBICHM1_1
T2T-CHM13v2.06160,212,959 - 160,245,813 (-)NCBIT2T-CHM13v2.0
Rsph3a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39178,164,446 - 8,198,388 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl178,164,446 - 8,198,656 (+)EnsemblGRCm39 Ensembl
GRCm38177,945,614 - 7,979,556 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl177,945,614 - 7,979,824 (+)EnsemblGRCm38mm10GRCm38
MGSCv37178,138,479 - 8,172,421 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36177,784,157 - 7,817,660 (+)NCBIMGSCv36mm8
Celera177,474,283 - 7,474,984 (-)NCBICelera
Cytogenetic Map17A1NCBI
cM Map174.82NCBI
Rsph3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8149,506,988 - 49,565,740 (-)NCBIGRCr8
mRatBN7.2147,101,961 - 47,155,201 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl147,101,961 - 47,154,232 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx147,665,045 - 47,703,111 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0153,652,529 - 53,690,574 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0147,740,516 - 47,778,582 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0147,412,151 - 47,478,924 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl147,426,258 - 47,477,524 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0148,729,556 - 48,780,832 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4141,313,530 - 41,336,537 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1141,316,470 - 41,370,068 (-)NCBI
Celera142,782,009 - 42,842,838 (-)NCBICelera
Cytogenetic Map1q11NCBI
Rsph3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554393,509,395 - 3,534,392 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554393,510,076 - 3,533,924 (+)NCBIChiLan1.0ChiLan1.0
RSPH3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25178,993,081 - 179,105,295 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16176,898,056 - 177,010,374 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06156,861,740 - 156,889,821 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16161,875,729 - 161,904,276 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6161,880,465 - 161,904,315 (-)Ensemblpanpan1.1panPan2
RSPH3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1148,329,171 - 48,349,924 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl148,329,211 - 48,349,088 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha149,171,625 - 49,192,001 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0148,513,493 - 48,534,673 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl148,513,534 - 48,534,213 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1148,389,455 - 48,409,743 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0148,260,340 - 48,280,628 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0148,819,818 - 48,840,110 (-)NCBIUU_Cfam_GSD_1.0
Rsph3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946143,313,711 - 143,341,249 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648910,569,541 - 10,593,100 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648910,568,736 - 10,592,912 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RSPH3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl18,244,040 - 8,265,659 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.118,243,177 - 8,265,816 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2110,141,811 - 10,149,319 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RSPH3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11386,562,453 - 86,582,483 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604058,957,000 - 58,976,458 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000000915   ⟹   ENSHGLP00000000874
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624929661,495 - 682,072 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000000916   ⟹   ENSHGLP00000000875
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624929671,061 - 682,072 (+)Ensembl
RefSeq Acc Id: XM_021251968   ⟹   XP_021107627
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624929661,257 - 682,772 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021107627 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB07031 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000000874
Reference Protein Sequences
RefSeq Acc Id: XP_021107627   ⟸   XM_021251968
RefSeq Acc Id: ENSHGLP00000000875   ⟸   ENSHGLT00000000916
RefSeq Acc Id: ENSHGLP00000000874   ⟸   ENSHGLT00000000915


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000000722 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000000915 ENTREZGENE
NCBI Gene Rsph3 ENTREZGENE