Znf397 (zinc finger protein 397) - Rat Genome Database

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Gene: Znf397 (zinc finger protein 397) Heterocephalus glaber
Analyze
Symbol: Znf397
Name: zinc finger protein 397
RGD ID: 18934243
Description: ENCODES a protein that exhibits protein heterodimerization activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); microtubule cytoskeleton (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247799,668,423 - 9,674,709 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247799,669,198 - 9,721,794 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Znf397
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247799,668,423 - 9,674,709 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247799,669,198 - 9,721,794 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ZNF397
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381835,241,034 - 35,259,227 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1835,241,030 - 35,267,133 (+)EnsemblGRCh38hg38GRCh38
GRCh371832,820,998 - 32,839,191 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361831,075,017 - 31,092,357 (+)NCBINCBI36Build 36hg18NCBI36
Build 341831,075,016 - 31,092,356NCBI
Celera1829,628,890 - 29,646,298 (+)NCBICelera
Cytogenetic Map18q12.2NCBI
HuRef1829,679,997 - 29,697,405 (+)NCBIHuRef
CHM1_11832,747,978 - 32,765,382 (+)NCBICHM1_1
T2T-CHM13v2.01835,431,795 - 35,450,511 (+)NCBIT2T-CHM13v2.0
Zfp397
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391824,085,798 - 24,098,030 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1824,087,749 - 24,097,730 (+)EnsemblGRCm39 Ensembl
GRCm381823,952,741 - 23,964,671 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1823,954,692 - 23,964,673 (+)EnsemblGRCm38mm10GRCm38
MGSCv371824,113,189 - 24,123,172 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361824,097,696 - 24,105,876 (+)NCBIMGSCv36mm8
Celera1824,444,761 - 24,454,744 (+)NCBICelera
Cytogenetic Map18A2NCBI
cM Map1812.44NCBI
Zfp397
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81815,516,514 - 15,523,056 (+)NCBIGRCr8
mRatBN7.21815,241,764 - 15,253,148 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1815,242,096 - 15,300,984 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1815,427,230 - 15,433,414 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01816,209,934 - 16,216,118 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01815,499,672 - 15,505,856 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01815,856,841 - 15,865,574 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1815,856,801 - 15,863,053 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01815,623,490 - 15,631,605 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1815,190,280 - 15,196,499 (+)NCBICelera
Cytogenetic Map18p12NCBI
Znf397
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540221,974,795 - 21,978,770 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540221,973,687 - 21,982,202 (+)NCBIChiLan1.0ChiLan1.0
ZNF397
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21752,627,135 - 52,638,401 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11838,321,419 - 38,331,615 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01828,459,065 - 28,467,907 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11832,048,326 - 32,054,047 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1832,048,338 - 32,054,047 (+)Ensemblpanpan1.1panPan2
ZNF397
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1754,749,351 - 54,758,743 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl754,752,185 - 54,756,800 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha754,181,054 - 54,190,506 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0754,720,489 - 54,729,949 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl754,720,559 - 54,729,473 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1754,403,124 - 54,412,576 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0754,426,443 - 54,435,889 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0754,720,158 - 54,729,614 (-)NCBIUU_Cfam_GSD_1.0
Znf397
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494450,477,587 - 50,485,203 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365179,807,338 - 9,810,704 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365179,772,923 - 9,812,722 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF397
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6119,076,714 - 119,086,759 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16119,076,683 - 119,144,643 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26111,393,021 - 111,444,234 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF397
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11845,456,463 - 45,526,907 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1845,520,617 - 45,526,501 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605020,021,080 - 20,029,278 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000001622   ⟹   ENSHGLP00000001578
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247799,668,423 - 9,674,709 (+)Ensembl
RefSeq Acc Id: XM_021236673   ⟹   XP_021092332
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247799,708,553 - 9,721,587 (+)NCBI
RefSeq Acc Id: XM_021236674   ⟹   XP_021092333
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247799,708,541 - 9,721,587 (+)NCBI
RefSeq Acc Id: XM_021236675   ⟹   XP_021092334
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247799,708,566 - 9,721,587 (+)NCBI
RefSeq Acc Id: XM_021236676   ⟹   XP_021092335
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247799,708,656 - 9,721,587 (+)NCBI
RefSeq Acc Id: XM_021236677   ⟹   XP_021092336
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247799,669,213 - 9,677,138 (+)NCBI
RefSeq Acc Id: XM_021236678   ⟹   XP_021092337
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247799,669,354 - 9,677,138 (+)NCBI
RefSeq Acc Id: XM_021236679   ⟹   XP_021092338
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247799,669,354 - 9,677,138 (+)NCBI
RefSeq Acc Id: XM_021236680   ⟹   XP_021092339
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247799,669,198 - 9,721,794 (+)NCBI
RefSeq Acc Id: XP_021092339   ⟸   XM_021236680
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021092336   ⟸   XM_021236677
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021092337   ⟸   XM_021236678
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021092338   ⟸   XM_021236679
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021092333   ⟸   XM_021236674
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021092332   ⟸   XM_021236673
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021092334   ⟸   XM_021236675
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021092335   ⟸   XM_021236676
- Peptide Label: isoform X1
Ensembl Acc Id: ENSHGLP00000001578   ⟸   ENSHGLT00000001622


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000001202 Ensembl, ENTREZGENE
  ENSHGLG00000001455 ENTREZGENE
Ensembl Transcript ENSHGLT00000001622 ENTREZGENE
  ENSHGLT00000001953 ENTREZGENE
NCBI Gene Znf397 ENTREZGENE
UniProt A0AAX6R7K1_HETGA UniProtKB/TrEMBL
  A0AAX6R832_HETGA UniProtKB/TrEMBL
  A0AAX6R962_HETGA UniProtKB/TrEMBL