Nek6 (NIMA related kinase 6) - Rat Genome Database

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Gene: Nek6 (NIMA related kinase 6) Heterocephalus glaber
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Symbol: Nek6
Name: NIMA related kinase 6
RGD ID: 18934066
Description: ENCODES a protein that exhibits ATP binding (ortholog); DNA-binding transcription factor binding (ortholog); kinesin binding (ortholog); INVOLVED IN chromosome segregation (ortholog); peptidyl-serine phosphorylation (ortholog); positive regulation of canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN centriolar satellite (ortholog); centrosome (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: serine/threonine-protein kinase Nek6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476010,739,235 - 10,797,238 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476010,739,235 - 10,807,744 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Nek6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476010,739,235 - 10,797,238 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476010,739,235 - 10,807,744 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
NEK6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389124,257,606 - 124,353,307 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9124,257,606 - 124,353,307 (+)EnsemblGRCh38hg38GRCh38
GRCh379127,019,885 - 127,115,586 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369126,060,070 - 126,154,542 (+)NCBINCBI36Build 36hg18NCBI36
Build 349124,099,802 - 124,194,271NCBI
Celera997,667,169 - 97,761,958 (+)NCBICelera
Cytogenetic Map9q33.3NCBI
HuRef996,633,275 - 96,727,666 (+)NCBIHuRef
CHM1_19127,169,017 - 127,263,737 (+)NCBICHM1_1
T2T-CHM13v2.09136,455,708 - 136,551,354 (+)NCBIT2T-CHM13v2.0
Nek6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39238,314,052 - 38,477,502 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl238,401,655 - 38,484,618 (+)EnsemblGRCm39 Ensembl
GRCm38238,483,863 - 38,587,490 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl238,511,643 - 38,594,606 (+)EnsemblGRCm38mm10GRCm38
MGSCv37238,367,396 - 38,443,010 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36238,333,709 - 38,410,050 (+)NCBIMGSCv36mm8
MGSCv36238,950,290 - 39,027,048 (+)NCBIMGSCv36mm8
Celera240,274,369 - 40,309,329 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map224.41NCBI
Nek6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8342,693,994 - 42,766,026 (+)NCBIGRCr8
mRatBN7.2322,284,269 - 22,356,302 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl322,284,279 - 22,395,990 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx325,752,489 - 25,824,488 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0334,337,482 - 34,409,485 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0332,149,813 - 32,221,975 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0322,811,927 - 22,888,598 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl322,811,927 - 22,888,598 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0328,037,221 - 28,114,175 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4318,348,698 - 18,381,895 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1318,245,069 - 18,278,267 (+)NCBI
Celera320,719,448 - 20,791,246 (+)NCBICelera
Cytogenetic Map3q12NCBI
Nek6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554193,762,643 - 3,820,979 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554193,762,643 - 3,833,000 (-)NCBIChiLan1.0ChiLan1.0
NEK6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21115,002,104 - 15,097,346 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1915,004,800 - 15,099,678 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0995,379,090 - 95,474,348 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19123,900,131 - 123,994,658 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9123,903,240 - 123,994,658 (+)Ensemblpanpan1.1panPan2
NEK6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1958,594,026 - 58,677,261 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl958,594,045 - 58,674,274 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha957,790,942 - 57,874,150 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0959,513,709 - 59,597,117 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl959,513,709 - 59,594,207 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1958,271,493 - 58,354,450 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0958,588,052 - 58,671,089 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0958,678,689 - 58,761,888 (-)NCBIUU_Cfam_GSD_1.0
Nek6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947192,837,785 - 192,864,646 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648712,606,312 - 12,633,285 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648712,606,312 - 12,632,982 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NEK6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1265,078,435 - 265,176,903 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11265,078,407 - 265,170,960 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21298,837,214 - 298,942,112 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NEK6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11213,791,431 - 13,887,713 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1213,792,903 - 13,842,307 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660792,189,264 - 2,285,578 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000019389   ⟹   ENSHGLP00000019198
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476010,739,235 - 10,797,238 (-)Ensembl
RefSeq Acc Id: XM_004849398   ⟹   XP_004849455
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476010,739,235 - 10,790,550 (-)NCBI
RefSeq Acc Id: XM_004849399   ⟹   XP_004849456
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476010,739,235 - 10,807,744 (-)NCBI
RefSeq Acc Id: XM_021262091   ⟹   XP_021117750
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476010,739,235 - 10,804,032 (-)NCBI
RefSeq Acc Id: XM_021262092   ⟹   XP_021117751
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476010,739,235 - 10,772,255 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004849455 (Get FASTA)   NCBI Sequence Viewer  
  XP_004849456 (Get FASTA)   NCBI Sequence Viewer  
  XP_021117750 (Get FASTA)   NCBI Sequence Viewer  
  XP_021117751 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000019198
RefSeq Acc Id: XP_004849456   ⟸   XM_004849399
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021117750   ⟸   XM_021262091
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004849455   ⟸   XM_004849398
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021117751   ⟸   XM_021262092
- Peptide Label: isoform X2
Ensembl Acc Id: ENSHGLP00000019198   ⟸   ENSHGLT00000019389


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000013776 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000019389 ENTREZGENE
NCBI Gene Nek6 ENTREZGENE