Krt79 (keratin 79) - Rat Genome Database

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Gene: Krt79 (keratin 79) Heterocephalus glaber
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Symbol: Krt79
Name: keratin 79
RGD ID: 18933488
Description: ENCODES a protein that exhibits enzyme binding (ortholog); INVOLVED IN intermediate filament organization (inferred); keratinization (inferred); FOUND IN extracellular space (inferred); intermediate filament (inferred); keratin filament (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Keratin, type II cytoskeletal 79
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624904914,148 - 922,728 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624904913,810 - 923,050 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Krt79
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624904914,148 - 922,728 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624904913,810 - 923,050 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
KRT79
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381252,821,408 - 52,834,311 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1252,821,408 - 52,834,311 (-)EnsemblGRCh38hg38GRCh38
GRCh371253,215,192 - 53,228,095 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361251,501,498 - 51,514,344 (-)NCBINCBI36Build 36hg18NCBI36
Celera1252,861,510 - 52,874,357 (-)NCBICelera
Cytogenetic Map12q13.13NCBI
HuRef1250,259,243 - 50,272,090 (-)NCBIHuRef
CHM1_11253,182,037 - 53,194,883 (-)NCBICHM1_1
T2T-CHM13v2.01252,785,865 - 52,798,767 (-)NCBIT2T-CHM13v2.0
Krt79
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915101,837,767 - 101,848,759 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl15101,837,767 - 101,848,759 (-)EnsemblGRCm39 Ensembl
GRCm3815101,929,332 - 101,940,324 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15101,929,332 - 101,940,324 (-)EnsemblGRCm38mm10GRCm38
MGSCv3715101,759,763 - 101,770,755 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3615101,757,366 - 101,768,358 (-)NCBIMGSCv36mm8
Celera15104,081,197 - 104,092,188 (-)NCBICelera
Cytogenetic Map15F2NCBI
cM Map1557.14NCBI
Krt79
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87134,935,395 - 134,946,447 (-)NCBIGRCr8
mRatBN7.27133,056,710 - 133,067,750 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7133,056,709 - 133,067,705 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.07143,528,204 - 143,538,713 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7143,528,204 - 143,538,579 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07141,325,913 - 141,336,946 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47140,632,826 - 140,644,792 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7129,494,402 - 129,504,743 (-)NCBICelera
Cytogenetic Map7q36NCBI
Krt79
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955458121,633 - 133,133 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955458121,681 - 132,775 (-)NCBIChiLan1.0ChiLan1.0
KRT79
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21041,358,343 - 41,371,270 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11241,355,106 - 41,368,033 (+)NCBINHGRI_mPanPan1
PanPan1.1 Ensembl1236,704,041 - 36,716,902 (+)Ensemblpanpan1.1panPan2
KRT79
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1272,269,857 - 2,280,537 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2743,971,752 - 43,982,434 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0272,271,027 - 2,281,708 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1272,287,509 - 2,298,185 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0272,273,691 - 2,284,402 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02744,370,689 - 44,381,372 (-)NCBIUU_Cfam_GSD_1.0
Krt79
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494562,966,144 - 62,977,194 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651210,188,022 - 10,197,773 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651210,187,655 - 10,197,773 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KRT79
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl518,108,680 - 18,119,773 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1518,108,811 - 18,119,767 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2518,602,235 - 18,613,191 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KRT79
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11148,952,916 - 48,968,365 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1148,953,338 - 48,965,795 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037197,105,695 - 197,118,938 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000001093   ⟹   ENSHGLP00000001052
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624904914,148 - 922,728 (-)Ensembl
RefSeq Acc Id: XM_004872699   ⟹   XP_004872756
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624904913,810 - 923,050 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004872756 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB09298 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000001052
RefSeq Acc Id: XP_004872756   ⟸   XM_004872699
- UniProtKB: A0AAX6QGQ1 (UniProtKB/TrEMBL),   G5BJ37 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000001052   ⟸   ENSHGLT00000001093


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000000843 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000001093 ENTREZGENE
Gene3D-CATH 1.20.5.170 UniProtKB/TrEMBL
  Single helix bin UniProtKB/TrEMBL
  Vasodilator-stimulated phosphoprotein UniProtKB/TrEMBL
InterPro IF_conserved UniProtKB/TrEMBL
  IF_rod_dom UniProtKB/TrEMBL
  Keratin_2_head UniProtKB/TrEMBL
  Keratin_II UniProtKB/TrEMBL
NCBI Gene Krt79 ENTREZGENE
PANTHER GATA-TYPE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  KERATIN, TYPE II CYTOSKELETAL 79 UniProtKB/TrEMBL
Pfam Filament UniProtKB/TrEMBL
  Keratin_2_head UniProtKB/TrEMBL
PRINTS TYPE2KERATIN UniProtKB/TrEMBL
PROSITE IF_ROD_1 UniProtKB/TrEMBL
  IF_ROD_2 UniProtKB/TrEMBL
SMART Filament UniProtKB/TrEMBL
Superfamily-SCOP Intermediate filament protein, coiled coil region UniProtKB/TrEMBL
  Prefoldin UniProtKB/TrEMBL
UniProt A0AAX6QGQ1 ENTREZGENE, UniProtKB/TrEMBL
  G5BJ37 ENTREZGENE, UniProtKB/TrEMBL