Krt79 (keratin 79) - Rat Genome Database

Name: Krt79
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Krt79 (keratin 79) Ictidomys tridecemlineatus

Analyze

Symbol:

Krt79

Name:

keratin 79

RGD ID:

12509469

Description:

ENCODES a protein that exhibits enzyme binding (inferred); structural constituent of skin epidermis (inferred); INVOLVED IN intermediate filament organization (inferred); keratinization (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN extracellular space (inferred); intermediate filament (inferred); keratin filament (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

keratin, type II cytoskeletal 79

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	KRT79 (keratin 79)	NCBI	Ortholog
Mus musculus (house mouse):	Krt79 (keratin 79)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Krt79 (keratin 79)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Krt79 (keratin 79)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	KRT79 (keratin 79)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	KRT79 (keratin 79)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	KRT79 (keratin 79)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	KRT79 (keratin 79)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Krt79 (keratin 79)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	62,966,144 - 62,977,194 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936512	10,188,022 - 10,197,773 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936512	10,187,655 - 10,197,773 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

intermediate filament organization (IEA)

keratinization (IEA)

Cellular Component

extracellular space (IEA)

intermediate filament (IEA)

keratin filament (IEA)

Molecular Function

enzyme binding (IEA)

protein binding (ISO)

structural constituent of skin epidermis (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Krt79
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	62,966,144 - 62,977,194 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936512	10,188,022 - 10,197,773 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936512	10,187,655 - 10,197,773 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

KRT79
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	52,821,408 - 52,834,311 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	52,821,408 - 52,834,311 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	53,215,192 - 53,228,095 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	51,501,498 - 51,514,344 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	12	52,861,510 - 52,874,357 (-)	NCBI		Celera
Cytogenetic Map	12	q13.13	NCBI
HuRef	12	50,259,243 - 50,272,090 (-)	NCBI		HuRef
CHM1_1	12	53,182,037 - 53,194,883 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	52,785,865 - 52,798,767 (-)	NCBI		T2T-CHM13v2.0

Krt79
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	101,837,767 - 101,848,759 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	101,837,767 - 101,848,759 (-)	Ensembl		GRCm39 Ensembl
GRCm38	15	101,929,332 - 101,940,324 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	101,929,332 - 101,940,324 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	101,759,763 - 101,770,755 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	101,757,366 - 101,768,358 (-)	NCBI		MGSCv36	mm8
Celera	15	104,081,197 - 104,092,188 (-)	NCBI		Celera
Cytogenetic Map	15	F2	NCBI
cM Map	15	57.14	NCBI

Krt79
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	134,935,395 - 134,946,447 (-)	NCBI		GRCr8
mRatBN7.2	7	133,056,710 - 133,067,750 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	133,056,709 - 133,067,705 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	7	143,528,204 - 143,538,713 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	143,528,204 - 143,538,579 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	141,325,913 - 141,336,946 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	140,632,826 - 140,644,792 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	7	129,494,402 - 129,504,743 (-)	NCBI		Celera
Cytogenetic Map	7	q36	NCBI

Krt79
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955458	121,633 - 133,133 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955458	121,681 - 132,775 (-)	NCBI	ChiLan1.0	ChiLan1.0

KRT79
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	41,358,343 - 41,371,270 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	41,355,106 - 41,368,033 (+)	NCBI		NHGRI_mPanPan1
PanPan1.1 Ensembl	12	36,704,041 - 36,716,902 (+)	Ensembl	panpan1.1		panPan2

KRT79
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	2,269,857 - 2,280,537 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	43,971,752 - 43,982,434 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	2,271,027 - 2,281,708 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	27	2,287,509 - 2,298,185 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	2,273,691 - 2,284,402 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	44,370,689 - 44,381,372 (-)	NCBI		UU_Cfam_GSD_1.0

KRT79
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	18,108,680 - 18,119,773 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	18,108,811 - 18,119,767 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	18,602,235 - 18,613,191 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

KRT79
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	48,952,916 - 48,968,365 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	48,953,338 - 48,965,795 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	197,105,695 - 197,118,938 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Krt79
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624904	914,148 - 922,728 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624904	913,810 - 923,050 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005325003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000007538 ⟹ ENSSTOP00000006737

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936512	10,188,022 - 10,197,773 (-)	Ensembl

RefSeq Acc Id:

XM_005325003 ⟹ XP_005325060

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	62,966,144 - 62,977,194 (+)	NCBI
SpeTri2.0	NW_004936512	10,187,655 - 10,197,773 (-)	NCBI

Sequence:

show sequence

GCCTGCTCTCGGCCGCTCTGCCAGCCATGAGATCCTCCCTGTCTCGGCAAACCTACTCAACCAA
AGGAGGCTTCAGCTCCAACTCAGCCAGCGGAGGGGGCGGGTGTCGAACCCGCACCAGCTTCAGC
TCCGTGACCATGTCCCGGAGCAGTGGCGGTGGTGGTGGGGCTCGCTGTGGCCCCAGCACCAGTG
GCTTTGGCAGCCGGAGCCTCTATAACTTGGGAGGCAGCAAGAGCATCTCTGTCAGTGTGGCCGG
AGGGGCCTCCTCGGGTCGGGCTCTGGGGGGCTTCGGCTTTGGCAGTGGGGCCTACATGGGCCTG
GGGGCTGGCAGGCAGACCTTCGGGCCTGCTTGTCCTCCAGGGGGGATCCAGGAGGTCACTGTCA
ACCAGAGCCTGCTGACCCCCCTCAATGTGGAGATAGACCCAGAGATCCAGCGGGTGCGCACCCA
GGAGCGTGAGCAGATCAAGACCCTCAACAACAAGTTCGCCTCCTTCATCGACAAGGTACGTTTC
CTGGAGCAGCAGAATAAAGTGCTGGAGACCAAGTGGGCTTTGCTGCAGGAGCAAAGCCAGAACA
TGGGTGTCACCAGAAACAACCTGGAGCCCATCTTTGAGGCCTTCCTGAGCAGCCTGCGGAGGCA
GCTGGATAGCAAGCAGGACGAGCGGGGGAGATTGGACTTGGAGCTGAGGAACGTGCAAGATCTC
CTGGAGGACTTCAAGAACAAGTACGAGGATGAAATCAATAAGCGCACCGCTTTGGAGAATGAGT
TTGTGGTGCTCAAGAAGGATGTGGATGCTGCGTATATGGGCCGAATGGATCTGCATGGCAAAGT
GGACTCCTTGACCCAGGAGATTGACTTCCTCCAGGCTCTCTATGAAATGGAGCTGAGCCAAGTG
CAGACCCACGTGTCTGACACCAAGGTCGTCCTGTCCATGGACAACAACCGCAGCCTGGATCTGG
ACAGCATCATTGCCGAGGTCAAGGCCCAGTATGAGCTGATTGCCCAGAGGAGCCGGGCGGAGGC
CGAGGCCTGGTACCAGACCAAGTACGAGGAGCTGCAGGTGACGGCAGGGAAGCATGGGGACACC
CTGCAGAACCTCAGGGACGAGATTTCGGAGCTTACCCGCATTATCCAGAGGCTGGAGATTGAGT
TGGAGGCGGCCAAGAAGCAGTGTCAGAAGCTGCAGGCGGCCATCGAGGAAGCGGAGCAGCGTGG
GGAGATGGCACTCAAGGATGCGAAGAAGAAGCTCGGGGATCTGGACACGGCCCTGCACCAGGCT
AAGGAGAACCTGGCCCGGCTGCTGCGTGACTACCAGGCCCTCATGAACGTCAAGCTGGCCCTGG
ACGTGGAGATTGCCACCTACCGCAAGCTGCTGGAGAGCGAGGAGAGCAGGATGTCTGGAGAATG
TCCCAGCACTGTCAGCATTTCTGTGACTGGCAACTCCACCACCATGGTTGGAGGCAGTGCGGCT
GGCTTTGGGGGTGGCGTCTCCCTAGGTGGGAGCGGGGGTGGCTTCAAGGCTGGATTCAGCACGA
ATGTGGGCTACAGCAATGTCAAAGGCGGGGTCGGCTCCGGGGGCACCTCCATCCTGCGGAAGAC
CACCACGGTCAAGACGTCCAGCCGGAGGTACTAGCCTCTGAGACGTGCATGCCGGGGGCCCTGC
AGTCAGTCCTCTCACTGCCCCATCCCCATCCCTGCTACCCTCTCCAACCTTCTCAGGAACAGCC
CTGGGGACCACAGACCCGTGTTTTTTCACACCACACTATTTGGGTACGGTTTGTATTGGGGGAA
AGGCTCAAATCTACCCAGTTTTTCTCCTGGGAGGTTAAGGTCCTCATCTTGAGCAGCATGGTCG
AGTGATCTGATGGTGACCACTGAGAGGAGACTGGGTGTCCCAGGCCACCTCTGTCTCGCTCACC
GCCTCTGCCTTTCTGCTGGGAGTCCAGGGCTGGCGGGGGAGGAAGGGGGAAGTGAAGAGTGGTT
CCCCAAGATCCTCCAACCTCCCCAGTCACCCACCCCCTCCTCCACCGCGTCCCCGTTCTGTGCC
TGTGATCTGTCTCAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005325060	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000006737.3
GenBank Protein	KAG3291890	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005325060 ⟸ XM_005325003

- UniProtKB:

I3M9X8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MRSSLSRQTYSTKGGFSSNSASGGGGCRTRTSFSSVTMSRSSGGGGGARCGPSTSGFGSRSLYN
LGGSKSISVSVAGGASSGRALGGFGFGSGAYMGLGAGRQTFGPACPPGGIQEVTVNQSLLTPLN
VEIDPEIQRVRTQEREQIKTLNNKFASFIDKVRFLEQQNKVLETKWALLQEQSQNMGVTRNNLE
PIFEAFLSSLRRQLDSKQDERGRLDLELRNVQDLLEDFKNKYEDEINKRTALENEFVVLKKDVD
AAYMGRMDLHGKVDSLTQEIDFLQALYEMELSQVQTHVSDTKVVLSMDNNRSLDLDSIIAEVKA
QYELIAQRSRAEAEAWYQTKYEELQVTAGKHGDTLQNLRDEISELTRIIQRLEIELEAAKKQCQ
KLQAAIEEAEQRGEMALKDAKKKLGDLDTALHQAKENLARLLRDYQALMNVKLALDVEIATYRK
LLESEESRMSGECPSTVSISVTGNSTTMVGGSAAGFGGGVSLGGSGGGFKAGFSTNVGYSNVKG
GVGSGGTSILRKTTTVKTSSRRY

hide sequence

RefSeq Acc Id:

ENSSTOP00000006737 ⟸ ENSSTOT00000007538

Protein Domains

IF rod

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000007546	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000007538.3	UniProtKB/TrEMBL
Gene3D-CATH	1.20.5.170	UniProtKB/TrEMBL
	Single helix bin	UniProtKB/TrEMBL
	Vasodilator-stimulated phosphoprotein	UniProtKB/TrEMBL
InterPro	IF_conserved	UniProtKB/TrEMBL
	IF_rod_dom	UniProtKB/TrEMBL
	Keratin_2_head	UniProtKB/TrEMBL
	Keratin_II	UniProtKB/TrEMBL
NCBI Gene	Krt79	ENTREZGENE
PANTHER	GATA-TYPE DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
	KERATIN, TYPE II CYTOSKELETAL 79	UniProtKB/TrEMBL
Pfam	Filament	UniProtKB/TrEMBL
	Keratin_2_head	UniProtKB/TrEMBL
PRINTS	TYPE2KERATIN	UniProtKB/TrEMBL
PROSITE	IF_ROD_1	UniProtKB/TrEMBL
	IF_ROD_2	UniProtKB/TrEMBL
	PROKAR_LIPOPROTEIN	UniProtKB/TrEMBL
SMART	Filament	UniProtKB/TrEMBL
Superfamily-SCOP	Intermediate filament protein, coiled coil region	UniProtKB/TrEMBL
UniProt	I3M9X8	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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