Pank2 (pantothenate kinase 2) - Rat Genome Database

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Gene: Pank2 (pantothenate kinase 2) Heterocephalus glaber
Analyze
Symbol: Pank2
Name: pantothenate kinase 2
RGD ID: 18933383
Description: ENCODES a protein that exhibits pantothenate kinase activity (ortholog); INVOLVED IN aerobic respiration (ortholog); angiogenesis (ortholog); coenzyme A biosynthetic process (ortholog); ASSOCIATED WITH cone-rod dystrophy (ortholog); dystonia (ortholog); genetic disease (ortholog); FOUND IN cytosol (ortholog); mitochondrial intermembrane space (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: pantothenate kinase 2, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247414,966,260 - 5,007,207 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247414,966,136 - 5,025,465 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Pank2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247414,966,260 - 5,007,207 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247414,966,136 - 5,025,465 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PANK2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38203,888,781 - 3,929,887 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl203,888,839 - 3,929,887 (+)EnsemblGRCh38hg38GRCh38
GRCh37203,869,428 - 3,910,534 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36203,817,486 - 3,852,502 (+)NCBINCBI36Build 36hg18NCBI36
Build 34203,818,456 - 3,852,501NCBI
Celera203,931,353 - 3,966,375 (+)NCBICelera
Cytogenetic Map20p13NCBI
HuRef203,818,171 - 3,853,155 (+)NCBIHuRef
CHM1_1203,869,486 - 3,904,501 (+)NCBICHM1_1
T2T-CHM13v2.0203,919,717 - 3,960,811 (+)NCBIT2T-CHM13v2.0
Pank2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392131,103,928 - 131,141,108 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2131,104,415 - 131,141,108 (+)EnsemblGRCm39 Ensembl
GRCm382131,262,008 - 131,299,188 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2131,262,495 - 131,299,188 (+)EnsemblGRCm38mm10GRCm38
MGSCv372131,088,236 - 131,124,924 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362130,953,941 - 130,988,132 (+)NCBIMGSCv36mm8
Celera2132,488,862 - 132,525,361 (+)NCBICelera
Cytogenetic Map2F1NCBI
cM Map263.31NCBI
Pank2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83138,936,448 - 138,974,196 (+)NCBIGRCr8
mRatBN7.23118,483,382 - 118,519,551 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3118,483,444 - 118,518,320 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3122,377,611 - 122,412,651 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03130,977,021 - 131,011,891 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03128,633,718 - 128,668,758 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03123,807,911 - 123,841,797 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3123,807,952 - 123,841,797 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03130,303,253 - 130,340,189 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43118,970,527 - 119,004,728 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13118,874,080 - 118,910,207 (+)NCBI
Celera3117,291,291 - 117,326,233 (+)NCBICelera
Cytogenetic Map3q36NCBI
Pank2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541514,723,087 - 14,751,423 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541514,722,951 - 14,752,493 (+)NCBIChiLan1.0ChiLan1.0
PANK2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2214,851,394 - 4,886,600 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1204,848,256 - 4,883,409 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0203,924,054 - 3,959,393 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1203,723,211 - 3,757,748 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl203,723,211 - 3,757,748 (+)Ensemblpanpan1.1panPan2
PANK2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12417,461,406 - 17,475,248 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2417,463,447 - 17,490,360 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2417,289,857 - 17,319,601 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02417,878,250 - 17,908,675 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2417,881,208 - 17,908,663 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12417,473,257 - 17,503,635 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02417,585,849 - 17,614,588 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02417,912,622 - 17,942,441 (-)NCBIUU_Cfam_GSD_1.0
Pank2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640166,353,587 - 166,381,146 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648514,785,467 - 14,811,117 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648514,785,050 - 14,804,258 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PANK2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1731,798,785 - 31,828,496 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11731,797,604 - 31,844,301 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21736,139,594 - 36,169,170 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PANK2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1234,577,859 - 34,612,258 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl234,578,207 - 34,611,987 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660719,839,672 - 9,873,822 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000011148   ⟹   ENSHGLP00000011024
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247414,966,260 - 5,007,207 (+)Ensembl
RefSeq Acc Id: XM_004840759   ⟹   XP_004840816
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247414,966,136 - 5,010,342 (+)NCBI
RefSeq Acc Id: XM_021255010   ⟹   XP_021110669
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247414,966,138 - 5,025,465 (+)NCBI
RefSeq Acc Id: XM_021255011   ⟹   XP_021110670
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247414,966,626 - 5,010,342 (+)NCBI
RefSeq Acc Id: XR_002393459
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247414,966,138 - 5,025,465 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004840816 (Get FASTA)   NCBI Sequence Viewer  
  XP_021110669 (Get FASTA)   NCBI Sequence Viewer  
  XP_021110670 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000011024
RefSeq Acc Id: XP_004840816   ⟸   XM_004840759
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021110669   ⟸   XM_021255010
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021110670   ⟸   XM_021255011
- Peptide Label: isoform X3
Ensembl Acc Id: ENSHGLP00000011024   ⟸   ENSHGLT00000011148


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000007908 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000011148 ENTREZGENE
NCBI Gene Pank2 ENTREZGENE