Smu1 (SMU1 DNA replication regulator and spliceosomal factor) - Rat Genome Database

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Gene: Smu1 (SMU1 DNA replication regulator and spliceosomal factor) Heterocephalus glaber
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Symbol: Smu1
Name: SMU1 DNA replication regulator and spliceosomal factor
RGD ID: 18931959
Description: INVOLVED IN mRNA processing (inferred); mRNA splicing, via spliceosome (inferred); RNA splicing (inferred); ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); distal arthrogryposis type 1A (ortholog); frontotemporal dementia and/or amyotrophic lateral sclerosis-6 (ortholog); FOUND IN nucleus (ortholog); U2-type precatalytic spliceosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: DNA replication regulator and spliceosomal factor; WD40 repeat-containing protein SMU1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473637,798,167 - 37,826,935 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473637,797,710 - 37,826,939 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Smu1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473637,798,167 - 37,826,935 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473637,797,710 - 37,826,939 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SMU1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38933,041,765 - 33,076,674 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl933,041,765 - 33,076,674 (-)EnsemblGRCh38hg38GRCh38
GRCh37933,041,763 - 33,076,672 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36933,031,850 - 33,066,714 (-)NCBINCBI36Build 36hg18NCBI36
Build 34933,037,168 - 33,066,644NCBI
Celera932,973,152 - 33,007,723 (-)NCBICelera
Cytogenetic Map9p21.1NCBI
HuRef933,000,244 - 33,034,724 (-)NCBIHuRef
CHM1_1933,041,616 - 33,076,467 (-)NCBICHM1_1
T2T-CHM13v2.0933,058,326 - 33,097,983 (-)NCBIT2T-CHM13v2.0
Smu1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39440,735,649 - 40,757,885 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl440,736,542 - 40,757,923 (-)EnsemblGRCm39 Ensembl
GRCm38440,735,649 - 40,757,885 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl440,736,542 - 40,757,923 (-)EnsemblGRCm38mm10GRCm38
MGSCv37440,682,682 - 40,704,918 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36440,925,789 - 40,946,542 (-)NCBIMGSCv36mm8
Celera440,395,909 - 40,418,582 (-)NCBICelera
Cytogenetic Map4A5NCBI
cM Map420.46NCBI
Smu1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8560,652,680 - 60,671,251 (-)NCBIGRCr8
mRatBN7.2555,856,691 - 55,875,262 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl555,856,246 - 55,875,300 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx557,822,380 - 57,840,946 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0559,641,542 - 59,660,108 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0559,635,611 - 59,654,276 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0557,042,301 - 57,061,379 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl557,042,705 - 57,061,365 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0561,576,122 - 61,595,202 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4558,115,070 - 58,133,640 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1558,115,248 - 58,133,819 (-)NCBI
Celera554,468,882 - 54,487,453 (-)NCBICelera
Cytogenetic Map5q22NCBI
Smu1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554722,570,340 - 2,600,146 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554722,570,248 - 2,600,551 (+)NCBIChiLan1.0ChiLan1.0
SMU1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21191,529,456 - 91,560,515 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1991,535,344 - 91,566,456 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0932,819,539 - 32,851,273 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1933,627,765 - 33,659,530 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl933,628,027 - 33,659,539 (-)Ensemblpanpan1.1panPan2
SMU1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11150,172,679 - 50,195,719 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1150,174,153 - 50,195,644 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1148,802,624 - 48,824,195 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01151,114,748 - 51,136,321 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1151,113,275 - 51,136,290 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11149,777,760 - 49,799,378 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01149,644,471 - 49,666,053 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01150,409,655 - 50,431,231 (-)NCBIUU_Cfam_GSD_1.0
Smu1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947165,067,775 - 165,091,578 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365241,615,129 - 1,639,193 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365241,615,299 - 1,639,133 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SMU1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1033,399,383 - 33,430,971 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11033,399,383 - 33,426,313 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21037,653,407 - 37,680,329 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SMU1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11247,188,919 - 47,214,320 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603844,084,954 - 44,118,204 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


RefSeq Acc Id: ENSHGLT00000012919   ⟹   ENSHGLP00000012782
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473637,798,167 - 37,826,935 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000012920   ⟹   ENSHGLP00000012783
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473637,798,318 - 37,824,799 (-)Ensembl
RefSeq Acc Id: XM_004838393   ⟹   XP_004838450
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473637,797,710 - 37,826,939 (-)NCBI
RefSeq Acc Id: XM_004838394   ⟹   XP_004838451
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473637,797,710 - 37,825,595 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004838450 (Get FASTA)   NCBI Sequence Viewer  
  XP_004838451 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000012782
  ENSHGLP00000012783
GenBank Protein JAO02516 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004838450   ⟸   XM_004838393
- Peptide Label: isoform X1
- UniProtKB: A0A0P6K7N1 (UniProtKB/TrEMBL),   G5B039 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004838451   ⟸   XM_004838394
- Peptide Label: isoform X2
- UniProtKB: G5B039 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000012782   ⟸   ENSHGLT00000012919
RefSeq Acc Id: ENSHGLP00000012783   ⟸   ENSHGLT00000012920


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000009143 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000012919 ENTREZGENE
  ENSHGLT00000012920 ENTREZGENE
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro CTLH_C UniProtKB/TrEMBL
  G-protein_beta_WD-40_rep UniProtKB/TrEMBL
  LisH UniProtKB/TrEMBL
  SMU1 UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
KEGG Report hgl:101720596 UniProtKB/TrEMBL
NCBI Gene Smu1 ENTREZGENE
PANTHER PTHR22848 UniProtKB/TrEMBL
  WD40 REPEAT-CONTAINING PROTEIN SMU1 UniProtKB/TrEMBL
Pfam LisH_TPL UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
PRINTS GPROTEINBRPT UniProtKB/TrEMBL
PROSITE CTLH UniProtKB/TrEMBL
  LISH UniProtKB/TrEMBL
  WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART CTLH UniProtKB/TrEMBL
  LisH UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt A0A0P6K7N1 ENTREZGENE, UniProtKB/TrEMBL
  G5B039 ENTREZGENE, UniProtKB/TrEMBL