LOC101710042 (keratin-associated protein 11-1) - Rat Genome Database

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Advanced Search (OLGA)
Gene: LOC101710042 (keratin-associated protein 11-1) Heterocephalus glaber
Analyze
Symbol: LOC101710042 (Ensembl: KRTAP11-1)
Name: keratin-associated protein 11-1
RGD ID: 18931920
Description: ENCODES a protein that exhibits structural molecule activity (inferred); FOUND IN cytosol (inferred); intermediate filament (inferred); keratin filament (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474519,371,264 - 19,371,707 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474519,371,264 - 19,371,707 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
LOC101710042
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474519,371,264 - 19,371,707 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474519,371,264 - 19,371,707 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
KRTAP11-1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382130,880,644 - 30,881,580 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2130,880,644 - 30,881,580 (-)EnsemblGRCh38hg38GRCh38
GRCh372132,252,963 - 32,253,899 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362131,174,834 - 31,175,745 (-)NCBINCBI36Build 36hg18NCBI36
Build 342131,174,836 - 31,175,745NCBI
Celera2117,435,937 - 17,436,848 (-)NCBICelera
Cytogenetic Map21q22.11NCBI
HuRef2117,662,496 - 17,663,407 (-)NCBIHuRef
CHM1_12131,814,848 - 31,815,759 (-)NCBICHM1_1
T2T-CHM13v2.02129,248,387 - 29,249,323 (-)NCBIT2T-CHM13v2.0
Krtap11-1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391689,367,064 - 89,368,071 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1689,367,064 - 89,368,071 (-)EnsemblGRCm39 Ensembl
GRCm381689,570,176 - 89,571,183 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1689,570,176 - 89,571,183 (-)EnsemblGRCm38mm10GRCm38
MGSCv371689,570,421 - 89,571,428 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1689,772,122 - 89,773,129 (-)NCBICelera
Cytogenetic Map16C3.3NCBI
cM Map1651.42NCBI
Krtap11-1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81142,296,147 - 42,297,151 (-)NCBIGRCr8
mRatBN7.21128,809,940 - 28,810,944 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1128,810,341 - 28,810,892 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1137,489,356 - 37,490,360 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01130,189,382 - 30,190,386 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01129,358,981 - 29,359,985 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01129,709,809 - 29,711,328 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1129,710,298 - 29,710,849 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01133,331,876 - 33,332,729 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41129,368,418 - 29,368,969 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1128,501,631 - 28,503,150 (-)NCBICelera
Cytogenetic Map11q11NCBI
LOC102012159
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540730,616,942 - 30,617,415 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540730,616,573 - 30,617,451 (-)NCBIChiLan1.0ChiLan1.0
LOC100996196
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22226,988,044 - 26,993,784 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12121,847,064 - 21,852,814 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02117,242,331 - 17,243,396 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12130,626,543 - 30,627,448 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2130,626,932 - 30,627,423 (-)Ensemblpanpan1.1panPan2
KRTAP11-1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13125,879,638 - 25,920,493 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3125,870,035 - 25,911,009 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03125,994,781 - 26,035,743 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3125,995,174 - 25,995,635 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13125,942,242 - 25,983,159 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03125,953,816 - 25,994,795 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03126,421,892 - 26,462,790 (-)NCBIUU_Cfam_GSD_1.0
LOC101966313
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497126,455,508 - 26,456,454 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650011,011,460 - 11,011,951 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650011,011,456 - 11,011,960 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KRTAP11-1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13194,506,052 - 194,506,525 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113194,505,660 - 194,506,576 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213204,904,394 - 204,905,308 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KRTAP11-1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1261,238,451 - 61,241,444 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl261,240,513 - 61,240,971 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660713,791,275 - 3,792,206 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000028636   ⟹   ENSHGLP00000028224
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474519,371,264 - 19,371,707 (-)Ensembl
RefSeq Acc Id: XM_004842581   ⟹   XP_004842638
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474519,371,264 - 19,371,707 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004842638 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB16136 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000028224
RefSeq Acc Id: XP_004842638   ⟸   XM_004842581
- UniProtKB: G5C3M5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000028224   ⟸   ENSHGLT00000028636


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000020426 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000028636 ENTREZGENE
InterPro Keratin_matx UniProtKB/TrEMBL
  KRTAP_PMG UniProtKB/TrEMBL
KEGG Report hgl:101710042 UniProtKB/TrEMBL
NCBI Gene LOC101710042 ENTREZGENE
PANTHER KERATIN ASSOCIATED PROTEIN 3-3-RELATED UniProtKB/TrEMBL
  KERATIN-ASSOCIATED PROTEIN 11-1 UniProtKB/TrEMBL
Pfam PMG UniProtKB/TrEMBL
UniProt G5C3M5 ENTREZGENE, UniProtKB/TrEMBL