Zrsr2 (zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2) - Rat Genome Database

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Gene: Zrsr2 (zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2) Heterocephalus glaber
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Symbol: Zrsr2
Name: zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2
RGD ID: 18931880
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); spliceosomal complex assembly (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); autistic disorder (ortholog); Chromosome 8, Trisomy (ortholog); FOUND IN nucleolus (ortholog); U12-type spliceosomal complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624829578,326 - 604,594 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624829578,380 - 605,119 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Zrsr2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624829578,326 - 604,594 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624829578,380 - 605,119 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ZRSR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X15,790,484 - 15,823,260 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX15,790,156 - 15,830,694 (+)EnsemblGRCh38hg38GRCh38
GRCh37X15,808,607 - 15,841,383 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X15,718,495 - 15,751,304 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X15,568,251 - 15,601,037NCBI
CeleraX19,926,058 - 19,958,865 (+)NCBICelera
Cytogenetic MapXp22.2NCBI
HuRefX13,562,244 - 13,595,036 (+)NCBIHuRef
CHM1_1X15,839,547 - 15,872,350 (+)NCBICHM1_1
T2T-CHM13v2.0X15,373,416 - 15,406,182 (+)NCBIT2T-CHM13v2.0
Zrsr2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X162,719,268 - 162,741,662 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX162,718,439 - 162,741,657 (-)EnsemblGRCm39 Ensembl
GRCm38X163,932,594 - 163,958,666 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX163,935,443 - 163,958,661 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X160,373,375 - 160,396,598 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X159,279,548 - 159,302,703 (-)NCBIMGSCv36mm8
CeleraX147,154,858 - 147,178,306 (-)NCBICelera
Cytogenetic MapXF5NCBI
cM MapX75.99NCBI
Zrsr2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X34,179,279 - 34,201,989 (+)NCBIGRCr8
mRatBN7.2X30,547,424 - 30,571,613 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX30,547,536 - 30,570,125 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X32,304,707 - 32,327,419 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX32,304,757 - 32,328,364 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X32,666,577 - 32,689,276 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X51,304,090 - 51,327,172 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX30,890,633 - 30,913,278 (+)NCBICelera
Cytogenetic MapXq14NCBI
Zrsr2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555192,378,246 - 2,394,561 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555192,377,955 - 2,402,446 (-)NCBIChiLan1.0ChiLan1.0
ZRSR2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X17,585,126 - 17,623,508 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X17,589,344 - 17,624,498 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X8,413,483 - 8,447,340 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X15,771,738 - 15,804,931 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX15,772,064 - 15,804,913 (+)Ensemblpanpan1.1panPan2
ZRSR2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X12,046,163 - 12,073,617 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX12,046,921 - 12,073,440 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX11,896,852 - 11,923,904 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X12,007,769 - 12,034,825 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX12,008,111 - 12,034,648 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X12,076,905 - 12,103,955 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X12,064,387 - 12,091,439 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X12,089,579 - 12,116,641 (+)NCBIUU_Cfam_GSD_1.0
Zrsr2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X5,233,783 - 5,258,268 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364705,233,740 - 5,258,266 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364705,233,798 - 5,258,266 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZRSR2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX12,336,677 - 12,367,227 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X12,336,635 - 12,365,071 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X13,229,285 - 13,309,297 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZRSR2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X14,247,231 - 14,279,466 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX14,247,287 - 14,279,448 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605616,101,555 - 16,133,813 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000005245   ⟹   ENSHGLP00000005178
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624829578,326 - 604,594 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000005246   ⟹   ENSHGLP00000005179
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624829578,659 - 604,594 (+)Ensembl
RefSeq Acc Id: XM_021245297   ⟹   XP_021100956
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624829578,384 - 605,119 (+)NCBI
RefSeq Acc Id: XM_021245298   ⟹   XP_021100957
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624829578,383 - 605,119 (+)NCBI
RefSeq Acc Id: XM_021245299   ⟹   XP_021100958
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624829578,388 - 605,119 (+)NCBI
RefSeq Acc Id: XM_021245300   ⟹   XP_021100959
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624829578,387 - 605,119 (+)NCBI
RefSeq Acc Id: XM_021245301   ⟹   XP_021100960
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624829578,380 - 604,048 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021100960   ⟸   XM_021245301
- Peptide Label: isoform X5
RefSeq Acc Id: XP_021100957   ⟸   XM_021245298
- Peptide Label: isoform X2
- UniProtKB: A0A0P6J7D7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021100956   ⟸   XM_021245297
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J7D7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021100959   ⟸   XM_021245300
- Peptide Label: isoform X4
- UniProtKB: A0A0P6J7D7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021100958   ⟸   XM_021245299
- Peptide Label: isoform X3
- UniProtKB: G5ARH9 (UniProtKB/TrEMBL),   A0A0P6J7D7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000005178   ⟸   ENSHGLT00000005245
RefSeq Acc Id: ENSHGLP00000005179   ⟸   ENSHGLT00000005246


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000003790 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLG00100010131 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000005245 ENTREZGENE
  ENSHGLT00000089751 UniProtKB/TrEMBL
  ENSHGLT00100054374 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
  RRM_dom_euk UniProtKB/TrEMBL
  U2AF_small UniProtKB/TrEMBL
  Znf_CCCH UniProtKB/TrEMBL
KEGG Report hgl:101701353 UniProtKB/TrEMBL
NCBI Gene Zrsr2 ENTREZGENE
PANTHER PTHR12620 UniProtKB/TrEMBL
  ZINC FINGER CCCH-TYPE, RNA BINDING MOTIF AND SERINE/ARGININE RICH 2 UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/TrEMBL
  zf-CCCH UniProtKB/TrEMBL
PRINTS U2AUXFACTOR UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
  ZF_C3H1 UniProtKB/TrEMBL
SMART RRM_1 UniProtKB/TrEMBL
  ZnF_C3H1 UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A0P6J7D7 ENTREZGENE, UniProtKB/TrEMBL
  G5ARH9 ENTREZGENE, UniProtKB/TrEMBL