Matcap1 (microtubule associated tyrosine carboxypeptidase 1) - Rat Genome Database

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Gene: Matcap1 (microtubule associated tyrosine carboxypeptidase 1) Heterocephalus glaber
Analyze
Symbol: Matcap1
Name: microtubule associated tyrosine carboxypeptidase 1 (Ensembl:KIAA0895 like)
RGD ID: 18930674
Description: ENCODES a protein that exhibits metallocarboxypeptidase activity (ortholog); tubulin-tyrosine carboxypeptidase (ortholog); INVOLVED IN brain development (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); COVID-19 (ortholog); FOUND IN microtubule (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: KIAA0895 like; Kiaa0895l; uncharacterized protein KIAA0895-like homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474619,134,377 - 19,141,462 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474619,133,871 - 19,141,587 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
microtubule  (ISO)

Molecular Function

References

Genomics

Comparative Map Data
Matcap1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474619,134,377 - 19,141,462 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474619,133,871 - 19,141,587 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
MATCAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381667,175,599 - 67,183,963 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1667,175,599 - 67,184,040 (-)EnsemblGRCh38hg38GRCh38
GRCh371667,209,502 - 67,217,866 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361665,767,006 - 65,775,384 (-)NCBINCBI36Build 36hg18NCBI36
Celera1651,717,749 - 51,726,115 (-)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1653,082,693 - 53,091,059 (-)NCBIHuRef
CHM1_11668,616,832 - 68,625,210 (-)NCBICHM1_1
T2T-CHM13v2.01672,969,893 - 72,978,247 (-)NCBIT2T-CHM13v2.0
Matcap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398106,007,041 - 106,016,160 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8106,007,041 - 106,016,496 (-)EnsemblGRCm39 Ensembl
GRCm388105,280,409 - 105,289,528 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8105,280,409 - 105,289,864 (-)EnsemblGRCm38mm10GRCm38
MGSCv378107,804,309 - 107,813,428 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368108,169,538 - 108,178,179 (-)NCBIMGSCv36mm8
Celera8109,503,558 - 109,512,676 (-)NCBICelera
Cytogenetic Map8D3NCBI
cM Map853.04NCBI
Matcap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81950,067,978 - 50,076,715 (-)NCBIGRCr8
mRatBN7.21933,158,053 - 33,166,784 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1933,158,056 - 33,166,445 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1939,974,694 - 39,982,388 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01940,628,013 - 40,635,707 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01942,916,918 - 42,924,614 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01937,236,484 - 37,245,217 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1937,237,523 - 37,245,217 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01948,103,018 - 48,110,939 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41935,096,867 - 35,104,561 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1932,587,866 - 32,595,560 (-)NCBICelera
Cytogenetic Map19q11NCBI
Matcap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554849,434,523 - 9,442,711 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554849,434,959 - 9,442,711 (+)NCBIChiLan1.0ChiLan1.0
MATCAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21876,705,373 - 76,714,073 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11682,618,029 - 82,625,720 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01647,521,391 - 47,529,602 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11666,909,819 - 66,918,166 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1666,909,814 - 66,914,863 (-)Ensemblpanpan1.1panPan2
MATCAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1582,182,737 - 82,190,590 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha582,172,184 - 82,180,035 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0582,617,865 - 82,625,723 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl582,617,898 - 82,625,721 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1582,443,962 - 82,451,813 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0582,129,510 - 82,137,354 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0582,768,781 - 82,776,628 (+)NCBIUU_Cfam_GSD_1.0
Matcap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934941,932,608 - 41,939,563 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647517,649,551 - 17,657,292 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647517,648,565 - 17,656,445 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MATCAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl627,818,262 - 27,824,777 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1627,818,257 - 27,826,896 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2625,111,290 - 25,116,545 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MATCAP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1560,272,471 - 60,280,277 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl560,276,145 - 60,279,940 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604723,024,608 - 23,033,290 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000015595   ⟹   ENSHGLP00000015435
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474619,134,377 - 19,141,462 (+)Ensembl
RefSeq Acc Id: XM_004843056   ⟹   XP_004843113
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474619,133,871 - 19,140,332 (+)NCBI
RefSeq Acc Id: XM_004843057   ⟹   XP_004843114
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474619,134,194 - 19,140,332 (+)NCBI
RefSeq Acc Id: XM_021256898   ⟹   XP_021112557
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474619,134,579 - 19,141,586 (+)NCBI
RefSeq Acc Id: XM_021256899   ⟹   XP_021112558
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474619,134,578 - 19,141,587 (+)NCBI
RefSeq Acc Id: XM_021256901   ⟹   XP_021112560
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474619,134,584 - 19,141,584 (+)NCBI
RefSeq Acc Id: XM_021256902   ⟹   XP_021112561
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474619,134,194 - 19,141,584 (+)NCBI
RefSeq Acc Id: XM_021256903   ⟹   XP_021112562
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474619,133,871 - 19,141,584 (+)NCBI
RefSeq Acc Id: XP_021112562   ⟸   XM_021256903
- Peptide Label: isoform X5
- UniProtKB: A0AAX6SU10 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004843113   ⟸   XM_004843056
- Peptide Label: isoform X3
- UniProtKB: G5C648 (UniProtKB/TrEMBL),   A0AAX6P3X4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021112561   ⟸   XM_021256902
- Peptide Label: isoform X5
- UniProtKB: A0AAX6SU10 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004843114   ⟸   XM_004843057
- Peptide Label: isoform X3
- UniProtKB: G5C648 (UniProtKB/TrEMBL),   A0AAX6P3X4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021112558   ⟸   XM_021256899
- Peptide Label: isoform X2
- UniProtKB: G5C648 (UniProtKB/TrEMBL),   A0AAX6SXS0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021112557   ⟸   XM_021256898
- Peptide Label: isoform X1
- UniProtKB: G5C648 (UniProtKB/TrEMBL),   A0AAX6SS92 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021112560   ⟸   XM_021256901
- Peptide Label: isoform X4
- UniProtKB: A0AAX6STQ6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000015435   ⟸   ENSHGLT00000015595


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000011035 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000015595 ENTREZGENE
InterPro MATCAP UniProtKB/TrEMBL
NCBI Gene Kiaa0895l ENTREZGENE
PANTHER KIAA0895 LIKE UniProtKB/TrEMBL
  PTHR31817 UniProtKB/TrEMBL
Pfam DUF1704 UniProtKB/TrEMBL
SMART DUF1704 UniProtKB/TrEMBL
UniProt A0AAX6P3X4 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SS92 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6STQ6 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SU10 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SXS0 ENTREZGENE, UniProtKB/TrEMBL
  G5C648 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-21 Matcap1  microtubule associated tyrosine carboxypeptidase 1  Kiaa0895l  KIAA0895 like  Symbol and/or name change 5135510 APPROVED