Coq10b (coenzyme Q10B) - Rat Genome Database

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Gene: Coq10b (coenzyme Q10B) Heterocephalus glaber
Analyze
Symbol: Coq10b
Name: coenzyme Q10B
RGD ID: 18930628
Description: ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: coenzyme Q-binding protein COQ10 homolog B, mitochondrial; coenzyme Q10 homolog B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248892,753,990 - 2,769,235 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Coq10b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248892,753,990 - 2,769,235 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
COQ10B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382197,453,552 - 197,475,310 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2197,453,493 - 197,475,310 (+)EnsemblGRCh38hg38GRCh38
GRCh372198,318,276 - 198,340,034 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362198,026,476 - 198,048,096 (+)NCBINCBI36Build 36hg18NCBI36
Celera2192,074,111 - 192,095,724 (+)NCBICelera
Cytogenetic Map2q33.1NCBI
HuRef2190,170,684 - 190,192,464 (+)NCBIHuRef
CHM1_12198,324,072 - 198,345,690 (+)NCBICHM1_1
T2T-CHM13v2.02197,937,200 - 197,958,936 (+)NCBIT2T-CHM13v2.0
Coq10b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39155,091,929 - 55,111,861 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl155,091,929 - 55,111,861 (+)EnsemblGRCm39 Ensembl
GRCm38155,052,770 - 55,072,702 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl155,052,770 - 55,072,702 (+)EnsemblGRCm38mm10GRCm38
MGSCv37155,109,614 - 55,129,546 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36154,997,315 - 55,016,498 (+)NCBIMGSCv36mm8
Celera155,572,843 - 55,592,772 (+)NCBICelera
Cytogenetic Map1C1.2NCBI
cM Map128.0NCBI
Coq10b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8964,048,168 - 64,068,082 (+)NCBIGRCr8
mRatBN7.2956,553,751 - 56,573,671 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl956,553,758 - 56,573,663 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx965,063,617 - 65,082,593 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0970,179,514 - 70,198,490 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0968,479,090 - 68,498,222 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0961,655,963 - 61,675,880 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl961,655,963 - 61,675,873 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0961,337,179 - 61,357,092 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4953,858,750 - 53,878,664 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1953,860,163 - 53,880,077 (+)NCBI
Celera954,036,101 - 54,055,146 (+)NCBICelera
Cytogenetic Map9q31NCBI
Coq10b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554033,080,945 - 3,090,982 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554033,080,945 - 3,090,978 (-)NCBIChiLan1.0ChiLan1.0
COQ10B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213100,065,332 - 100,088,862 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B100,080,324 - 100,103,854 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B84,696,607 - 84,718,187 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B202,591,244 - 202,612,215 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B202,591,240 - 202,612,215 (+)Ensemblpanpan1.1panPan2
COQ10B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1376,984,886 - 7,005,572 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl376,984,935 - 7,005,406 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha377,931,067 - 7,951,766 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0376,875,413 - 6,896,131 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl376,808,860 - 6,914,722 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1376,874,210 - 6,894,913 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0376,841,018 - 6,861,879 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0376,864,326 - 6,885,030 (+)NCBIUU_Cfam_GSD_1.0
Coq10b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303155,118,998 - 155,143,556 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365061,694,380 - 1,719,414 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365061,694,516 - 1,718,994 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COQ10B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15101,338,141 - 101,354,948 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115101,338,012 - 101,354,714 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215112,512,217 - 112,528,766 (+)NCBISscrofa10.2Sscrofa10.2susScr3
COQ10B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11082,966,422 - 82,989,000 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1082,966,377 - 82,989,184 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040116,455,152 - 116,477,537 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021249784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01099738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_021249784   ⟹   XP_021105443
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248892,753,990 - 2,769,235 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021105443 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000011104
RefSeq Acc Id: XP_021105443   ⟸   XM_021249784


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000007969 ENTREZGENE
Ensembl Transcript ENSHGLT00000011228 ENTREZGENE
NCBI Gene Coq10b ENTREZGENE