Bud13 (BUD13 homolog) - Rat Genome Database

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Gene: Bud13 (BUD13 homolog) Heterocephalus glaber
Analyze
Symbol: Bud13
Name: BUD13 homolog
RGD ID: 18930415
Description: ENCODES a protein that exhibits RNA binding (inferred); INVOLVED IN mRNA splicing, via spliceosome (inferred); ASSOCIATED WITH Chromosome 11, Partial Trisomy 11q (ortholog); Dwarfism (ortholog); intellectual disability (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); U2-type precatalytic spliceosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478412,174,393 - 12,197,738 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478412,177,766 - 12,198,725 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Bud13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478412,174,393 - 12,197,738 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478412,177,766 - 12,198,725 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
BUD13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811116,748,173 - 116,772,987 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11116,748,170 - 116,772,987 (-)EnsemblGRCh38hg38GRCh38
GRCh3711116,618,889 - 116,643,703 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611116,124,099 - 116,148,914 (-)NCBINCBI36Build 36hg18NCBI36
Celera11113,774,294 - 113,799,111 (-)NCBICelera
Cytogenetic Map11q23.3NCBI
HuRef11112,550,865 - 112,575,689 (-)NCBIHuRef
CHM1_111116,503,528 - 116,528,356 (-)NCBICHM1_1
T2T-CHM13v2.011116,762,809 - 116,787,613 (-)NCBIT2T-CHM13v2.0
Bud13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39946,194,281 - 46,210,084 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl946,194,306 - 46,210,408 (+)EnsemblGRCm39 Ensembl
GRCm38946,282,976 - 46,298,783 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl946,283,008 - 46,299,110 (+)EnsemblGRCm38mm10GRCm38
MGSCv37946,091,095 - 46,106,866 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36946,034,007 - 46,049,778 (+)NCBIMGSCv36mm8
Celera943,572,054 - 43,587,820 (+)NCBICelera
Cytogenetic Map9A5.2NCBI
cM Map925.38NCBI
Bud13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8855,471,818 - 55,487,652 (+)NCBIGRCr8
mRatBN7.2846,575,124 - 46,590,964 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl846,575,115 - 46,590,958 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx852,076,468 - 52,092,279 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0850,355,240 - 50,371,051 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0848,219,514 - 48,235,326 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0850,573,026 - 50,588,860 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl850,573,026 - 50,588,858 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0849,198,988 - 49,214,822 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4849,267,086 - 49,282,920 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1849,278,890 - 49,295,734 (+)NCBI
Celera846,157,018 - 46,172,505 (+)NCBICelera
Cytogenetic Map8q22-q23NCBI
Bud13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541218,095,375 - 18,113,054 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541218,095,069 - 18,113,386 (-)NCBIChiLan1.0ChiLan1.0
BUD13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29117,448,869 - 117,478,860 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111118,554,095 - 118,584,307 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011111,583,588 - 111,610,703 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111115,517,647 - 115,545,098 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11115,517,647 - 115,545,098 (-)Ensemblpanpan1.1panPan2
BUD13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1516,789,297 - 16,862,933 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl516,789,313 - 16,888,894 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha516,841,423 - 16,941,844 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0516,735,971 - 16,836,411 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl516,736,010 - 16,801,282 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1516,872,832 - 16,973,258 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0516,775,410 - 16,876,227 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0516,818,546 - 16,919,366 (+)NCBIUU_Cfam_GSD_1.0
Bud13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494799,105,700 - 99,131,506 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365422,029,690 - 2,052,854 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365422,027,316 - 2,053,522 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BUD13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl944,078,195 - 44,165,249 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1944,120,830 - 44,165,410 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2949,208,937 - 49,239,368 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BUD13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11108,113,883 - 108,139,344 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1108,114,197 - 108,138,465 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604317,910,442 - 17,935,056 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000019100   ⟹   ENSHGLP00000018911
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462478412,174,393 - 12,197,738 (-)Ensembl
RefSeq Acc Id: XM_004856640   ⟹   XP_004856697
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478412,177,766 - 12,198,725 (-)NCBI
RefSeq Acc Id: XM_021237671   ⟹   XP_021093330
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478412,177,766 - 12,197,520 (-)NCBI
RefSeq Acc Id: XM_021237672   ⟹   XP_021093331
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478412,177,766 - 12,198,725 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004856697 (Get FASTA)   NCBI Sequence Viewer  
  XP_021093330 (Get FASTA)   NCBI Sequence Viewer  
  XP_021093331 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000018911
Reference Protein Sequences
RefSeq Acc Id: XP_021093331   ⟸   XM_021237672
- Peptide Label: isoform X3
- UniProtKB: G5BQH0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004856697   ⟸   XM_004856640
- Peptide Label: isoform X1
- UniProtKB: G5BQH0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021093330   ⟸   XM_021237671
- Peptide Label: isoform X2
- UniProtKB: G5BQH0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000018911   ⟸   ENSHGLT00000019100


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000013562 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000019100 ENTREZGENE
InterPro Bud13 UniProtKB/TrEMBL
NCBI Gene Bud13 ENTREZGENE
PANTHER BUD13 HOMOLOG UniProtKB/TrEMBL
  BUD13 HOMOLOG UniProtKB/TrEMBL
Pfam Bud13 UniProtKB/TrEMBL
UniProt G5BQH0 ENTREZGENE, UniProtKB/TrEMBL