Yipf1 (Yip1 domain family member 1) - Rat Genome Database

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Gene: Yipf1 (Yip1 domain family member 1) Heterocephalus glaber
Analyze
Symbol: Yipf1
Name: Yip1 domain family member 1
RGD ID: 18930065
Description: ENCODES a protein that exhibits small GTPase binding (inferred); INVOLVED IN vesicle-mediated transport (inferred); FOUND IN Golgi medial cisterna (ortholog); Golgi trans cisterna (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein YIPF1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624934612,830 - 667,223 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624934612,821 - 665,174 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Yipf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624934612,830 - 667,223 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624934612,821 - 665,174 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
YIPF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38153,851,733 - 53,889,797 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl153,851,719 - 53,889,798 (-)EnsemblGRCh38hg38GRCh38
GRCh37154,317,406 - 54,355,470 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36154,089,994 - 54,128,041 (-)NCBINCBI36Build 36hg18NCBI36
Celera152,605,075 - 52,643,123 (-)NCBICelera
Cytogenetic Map1p32.3NCBI
HuRef152,433,081 - 52,471,200 (-)NCBIHuRef
CHM1_1154,433,766 - 54,471,857 (-)NCBICHM1_1
T2T-CHM13v2.0153,734,613 - 53,772,679 (-)NCBIT2T-CHM13v2.0
Yipf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394107,149,068 - 107,217,020 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4107,171,560 - 107,217,020 (+)EnsemblGRCm39 Ensembl
GRCm384107,314,223 - 107,359,823 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4107,314,363 - 107,359,823 (+)EnsemblGRCm38mm10GRCm38
MGSCv374106,987,036 - 107,032,427 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364106,812,363 - 106,857,754 (+)NCBIMGSCv36mm8
Celera4105,669,142 - 105,718,384 (+)NCBICelera
Cytogenetic Map4C7NCBI
cM Map450.18NCBI
Yipf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85127,340,962 - 127,376,270 (+)NCBIGRCr8
mRatBN7.25122,112,144 - 122,147,729 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5122,112,212 - 122,147,466 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5124,731,520 - 124,766,765 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05126,454,549 - 126,489,800 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05126,505,867 - 126,541,115 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05126,932,730 - 126,968,110 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5126,932,760 - 126,968,190 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05130,781,744 - 130,817,034 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45128,425,973 - 128,461,233 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15128,431,198 - 128,466,459 (+)NCBI
Celera5120,857,831 - 120,893,179 (+)NCBICelera
Cytogenetic Map5q34NCBI
Yipf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554645,370,819 - 5,408,470 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554645,369,690 - 5,408,470 (+)NCBIChiLan1.0ChiLan1.0
YIPF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21172,947,041 - 172,984,902 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11172,087,839 - 172,125,713 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0153,125,832 - 53,163,694 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1154,720,334 - 54,758,382 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl154,720,334 - 54,758,382 (-)Ensemblpanpan1.1panPan2
YIPF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1555,118,572 - 55,154,653 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl555,118,458 - 55,154,236 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha555,184,475 - 55,221,311 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0555,306,133 - 55,342,996 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl555,230,295 - 55,343,004 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1555,301,244 - 55,337,093 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0555,190,500 - 55,227,319 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0555,580,041 - 55,616,719 (+)NCBIUU_Cfam_GSD_1.0
Yipf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505868,113,148 - 68,153,333 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365227,262,707 - 7,300,295 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365227,263,004 - 7,303,090 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
YIPF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6158,403,072 - 158,445,511 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16158,400,008 - 158,445,516 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26146,104,824 - 146,147,122 (+)NCBISscrofa10.2Sscrofa10.2susScr3
YIPF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12079,045,806 - 79,086,694 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2079,046,145 - 79,087,177 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603338,191,200 - 38,237,251 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000002671   ⟹   ENSHGLP00000002619
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624934612,830 - 667,223 (+)Ensembl
RefSeq Acc Id: XM_004874659   ⟹   XP_004874716
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624934612,821 - 665,174 (+)NCBI
RefSeq Acc Id: XM_013069207   ⟹   XP_012924661
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624934612,821 - 665,174 (+)NCBI
RefSeq Acc Id: XM_013069208   ⟹   XP_012924662
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624934612,889 - 665,174 (+)NCBI
RefSeq Acc Id: XM_021252080   ⟹   XP_021107739
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624934613,757 - 659,713 (+)NCBI
RefSeq Acc Id: XM_021252081   ⟹   XP_021107740
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624934613,757 - 659,713 (+)NCBI
RefSeq Acc Id: XM_021252082   ⟹   XP_021107741
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624934613,757 - 659,713 (+)NCBI
RefSeq Acc Id: XM_021252083   ⟹   XP_021107742
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624934613,757 - 657,817 (+)NCBI
RefSeq Acc Id: XM_021252084   ⟹   XP_021107743
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624934612,847 - 665,174 (+)NCBI
RefSeq Acc Id: XM_021252085   ⟹   XP_021107744
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624934613,757 - 665,174 (+)NCBI
RefSeq Acc Id: XP_004874716   ⟸   XM_004874659
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JHK3 (UniProtKB/TrEMBL),   G5C9L3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012924661   ⟸   XM_013069207
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JHK3 (UniProtKB/TrEMBL),   G5C9L3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021107743   ⟸   XM_021252084
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JHK3 (UniProtKB/TrEMBL),   G5C9L3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012924662   ⟸   XM_013069208
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JHK3 (UniProtKB/TrEMBL),   G5C9L3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021107744   ⟸   XM_021252085
- Peptide Label: isoform X2
- UniProtKB: A0AAX6SGQ1 (UniProtKB/TrEMBL),   G5C9L3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021107739   ⟸   XM_021252080
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JHK3 (UniProtKB/TrEMBL),   G5C9L3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021107740   ⟸   XM_021252081
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JHK3 (UniProtKB/TrEMBL),   G5C9L3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021107741   ⟸   XM_021252082
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JHK3 (UniProtKB/TrEMBL),   G5C9L3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021107742   ⟸   XM_021252083
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JHK3 (UniProtKB/TrEMBL),   G5C9L3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000002619   ⟸   ENSHGLT00000002671


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000001968 Ensembl, ENTREZGENE
  ENSHGLG00100004951 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000002671 ENTREZGENE
  ENSHGLT00100006686 UniProtKB/TrEMBL
InterPro Yip1 UniProtKB/TrEMBL
  Yip5/YIPF1/YIPF2 UniProtKB/TrEMBL
KEGG Report hgl:101706154 UniProtKB/TrEMBL
NCBI Gene Yipf1 ENTREZGENE
PANTHER PROTEIN YIPF1 UniProtKB/TrEMBL
  PTHR12822 UniProtKB/TrEMBL
Pfam Yip1 UniProtKB/TrEMBL
UniProt A0A0P6JHK3 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SGQ1 ENTREZGENE, UniProtKB/TrEMBL
  G5C9L3 ENTREZGENE, UniProtKB/TrEMBL